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directory /test-data/ @ 16:9f354c7c8c92 draft

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file blobs.h5ad 74040 -rw-r--r--
file cosg.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_1.h5ad 561808 -rw-r--r--
file cosg.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_1_out.h5ad 561560 -rw-r--r--
file external.pp.magic.all_genes.krumsiek11.h5ad 138192 -rw-r--r--
file external.pp.magic.pca_only.krumsiek11.h5ad 103920 -rw-r--r--
file krumsiek11.h5ad 77632 -rw-r--r--
file krumsiek11.loom 44645 -rw-r--r--
file krumsiek11_counts_per_cell 16000 -rw-r--r--
file paul15_subsample.h5ad 838114 -rw-r--r--
file pbmc68k_reduced.h5ad 2544684 -rw-r--r--
file pl.clustermap.krumsiek11.png 54789 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsampl.png 9879 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 9901 -rw-r--r--
file pl.dotplot.krumsiek11.png 35605 -rw-r--r--
file pl.dpt_groups_pseudotime.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 22088 -rw-r--r--
file pl.dpt_timeseries.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 112200 -rw-r--r--
file pl.draw_graph.png 152206 -rw-r--r--
file pl.embedding_density.pbmc68k_reduced.png 309812 -rw-r--r--
file pl.heatmap.krumsiek11.png 25556 -rw-r--r--
file pl.highest_expr_genes.filter_genes_dispersion.krumsiek11-seurat.png 38230 -rw-r--r--
file pl.highly_variable_genes.seurat.blobs.png 34484 -rw-r--r--
file pl.matrixplot.krumsiek11.png 16583 -rw-r--r--
file pl.paga.paul15_gauss_braycurtis.png 34309 -rw-r--r--
file pl.paga_compare.paul15_gauss_braycurtis.png 47952 -rw-r--r--
file pl.pca.pbmc68k_reduced.CD3D_CD79A_components_2d.pdf 72123 -rw-r--r--
file pl.pca_loadings.pp.pca.krumsiek11.png 32366 -rw-r--r--
file pl.pca_overview.pp.pca.krumsiek11.png 8961 -rw-r--r--
file pl.pca_variance_ratio.pp.pca.krumsiek11.png 12764 -rw-r--r--
file pl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_1.png 930673 -rw-r--r--
file pl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_filtered_1.png 442714 -rw-r--r--
file pl.rank_genes_groups.rank_genes_groups.krumsiek11.png 52901 -rw-r--r--
file pl.rank_genes_groups_dotplot.rank_genes_groups.krumsiek11.png 109397 -rw-r--r--
file pl.rank_genes_groups_heatmap.rank_genes_groups.krumsiek11.png 57018 -rw-r--r--
file pl.rank_genes_groups_matrixplot.rank_genes_groups.krumsiek11.png 27151 -rw-r--r--
file pl.rank_genes_groups_stacked_violin.rank_genes_groups.krumsiek11.png 90220 -rw-r--r--
file pl.rank_genes_groups_violin.Ery.png 84172 -rw-r--r--
file pl.rank_genes_groups_violin.Mk.png 89348 -rw-r--r--
file pl.rank_genes_groups_violin.Mo.png 79622 -rw-r--r--
file pl.rank_genes_groups_violin.Neu.png 78838 -rw-r--r--
file pl.rank_genes_groups_violin.progenitor.png 98167 -rw-r--r--
file pl.scatter.krumsiek11.png 18157 -rw-r--r--
file pl.scatter.pbmc68k_reduced.png 22684 -rw-r--r--
file pl.scatter.pca.krumsiek11.png 35730 -rw-r--r--
file pl.scatter.umap.pbmc68k_reduced.png 19544 -rw-r--r--
file pl.stacked_violin.krumsiek11.png 23832 -rw-r--r--
file pl.tsne.krumsiek11.png 11813 -rw-r--r--
file pl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.png 68798 -rw-r--r--
file pl.violin.pbmc68k_reduced_custom.png 57783 -rw-r--r--
file pp.calculate_qc_metrics.sparce_csr_matrix.h5ad 3380588 -rw-r--r--
file pp.combat.blobs.h5ad 102200 -rw-r--r--
file pp.downsample_counts.random-randint.h5ad 4096376 -rw-r--r--
file pp.filter_cells.krumsiek11-max_genes.h5ad 83768 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.h5ad 53624 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.loom 34680 -rw-r--r--
file pp.filter_genes.krumsiek11-min_counts.h5ad 77944 -rw-r--r--
file pp.filter_genes_dispersion.krumsiek11-seurat.h5ad 64744 -rw-r--r--
file pp.filter_rank_genes_groups.h5ad 88872 -rw-r--r--
file pp.highly_variable_genes.krumsiek11-cell_ranger.h5ad 80632 -rw-r--r--
file pp.highly_variable_genes.seurat.blobs.h5ad 77328 -rw-r--r--
file pp.log1p.krumsiek11.h5ad 78528 -rw-r--r--
file pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 830440 -rw-r--r--
file pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 828568 -rw-r--r--
file pp.normalize_per_cell.krumsiek11.h5ad 43248 -rw-r--r--
file pp.normalize_total.krumsiek11.h5ad 81208 -rw-r--r--
file pp.pca.krumsiek11.h5ad 110864 -rw-r--r--
file pp.pca.krumsiek11_chunk.h5ad 112976 -rw-r--r--
file pp.pca.variance.krumsiek11.tabular 250 -rw-r--r--
file pp.recipe_seurat.recipe_zheng17.h5ad 85072 -rw-r--r--
file pp.recipe_weinreb17.paul15_subsample.h5ad 768368 -rw-r--r--
file pp.recipe_weinreb17.paul15_subsample.updated.h5ad 769264 -rw-r--r--
file pp.recipe_zheng17.random-randint.h5ad 4114792 -rw-r--r--
file pp.regress_out.krumsiek11.h5ad 77632 -rw-r--r--
file pp.scale.krumsiek11.h5ad 78256 -rw-r--r--
file pp.scale_max_value.krumsiek11.h5ad 78256 -rw-r--r--
file pp.sqrt.krumsiek11.h5ad 77632 -rw-r--r--
file pp.subsample.krumsiek11_fraction.h5ad 50664 -rw-r--r--
file pp.subsample.krumsiek11_n_obs.h5ad 22832 -rw-r--r--
file random-randint.h5ad 2025661 -rw-r--r--
file random.h5ad 42448 -rw-r--r--
file sparce_csr_matrix.h5ad 3264100 -rw-r--r--
file tl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 837128 -rw-r--r--
file tl.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 843648 -rw-r--r--
file tl.dpt.neighbors.paul15_gauss_braycurtis.obs.tabular 86632 -rw-r--r--
file tl.draw_graph.pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 834088 -rw-r--r--
file tl.embedding_density.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 835992 -rw-r--r--
file tl.embedding_density.umap.pbmc68k_reduced.h5ad 2836276 -rw-r--r--
file tl.leiden.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 835856 -rw-r--r--
file tl.louvain.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 835584 -rw-r--r--
file tl.paga.neighbors.paul15_gauss_braycurtis.h5ad 802456 -rw-r--r--
file tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 851224 -rw-r--r--
file tl.pca.krumsiek11.h5ad 110864 -rw-r--r--
file tl.pca.variance_ratio.krumsiek11.tabular 250 -rw-r--r--
file tl.rank_genes_groups.krumsiek11.h5ad 87096 -rw-r--r--
file tl.rank_genes_groups.liblinear.krumsiek11.h5ad 2524764 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_1.tsv 3348 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_filtered_1.tsv 1653 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad 2524764 -rw-r--r--
file tl.score_genes.krumsiek11.h5ad 83768 -rw-r--r--
file tl.score_genes_cell_cycle.krumsiek11.h5ad 91272 -rw-r--r--
file tl.tsne.krumsiek11.h5ad 87528 -rw-r--r--
file tl.tsne.krumsiek11_X_tsne.tabular 32596 -rw-r--r--
file tl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 832048 -rw-r--r--