# HG changeset patch
# User iuc
# Date 1716057080 0
# Node ID d844935c906cec1890a479467fc832ea1b80a66f
# Parent  7b9fafe32c867a5b3b8f707ab3a7260db84ea3c6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de

diff -r 7b9fafe32c86 -r d844935c906c macros.xml
--- a/macros.xml	Thu Mar 14 15:37:29 2024 +0000
+++ b/macros.xml	Sat May 18 18:31:20 2024 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">1.9.6</token>
-    <token name="@VERSION_SUFFIX@">2</token>
-    <token name="@profile@">22.05</token>
+    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@profile@">21.09</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement>
diff -r 7b9fafe32c86 -r d844935c906c normalize.xml
--- a/normalize.xml	Thu Mar 14 15:37:29 2024 +0000
+++ b/normalize.xml	Sat May 18 18:31:20 2024 +0000
@@ -322,7 +322,7 @@
 Similar functions are used, for example, by Seurat, Cell Ranger or SPRING.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.normalize_per_cell.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.normalize_per_cell.html>`__
 
 
 Normalization and filtering as of Zheng et al. (2017), the Cell Ranger R Kit of 10x Genomics (`pp.recipe_zheng17`)
@@ -341,7 +341,7 @@
 - scale to unit variance and shift to zero mean
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_zheng17.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.recipe_zheng17.html>`__
 
 
 Normalization and filtering as of Weinreb et al (2017) (`pp.recipe_weinreb17`)
@@ -350,7 +350,7 @@
 Expects non-logarithmized data. If using logarithmized data, pass `log=False`.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_weinreb17.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.recipe_weinreb17.html>`__
 
 
 Normalization and filtering as of Seurat et al (2015) (`pp.recipe_seurat`)
@@ -361,7 +361,7 @@
 Expects non-logarithmized data. If using logarithmized data, pass `log=False`.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_seurat.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.recipe_seurat.html>`__
 
 
 Markov Affinity-based Graph Imputation of Cells (MAGIC) as of Van Dijk D et al. (2018) (`external.pp.magic`)
@@ -375,7 +375,7 @@
 - Secondly, data diffusion is applied in the PCA space, rather than the data space, for speed and memory improvements.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.external.pp.magic.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.external.pp.magic.html>`__
 
     ]]></help>
     <expand macro="citations"/>