Mercurial > repos > iuc > scanpy_plot
comparison macros.xml @ 16:1072ce66b426 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
author | iuc |
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date | Tue, 20 Aug 2024 09:53:51 +0000 |
parents | 70fa84e99463 |
children | 2dfb2227a16c |
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15:70fa84e99463 | 16:1072ce66b426 |
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433 <expand macro="sanitize_query" /> | 433 <expand macro="sanitize_query" /> |
434 </param> | 434 </param> |
435 </when> | 435 </when> |
436 <when value="customfile"> | 436 <when value="customfile"> |
437 <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param> | 437 <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param> |
438 <param name="header" type="select" label="Header in the list of markers?"> | |
439 <option value="included">Header incldued</option> | |
440 <option value="not_included">Header not included</option> | |
441 </param> | |
438 </when> | 442 </when> |
439 </conditional> | 443 </conditional> |
440 </xml> | 444 </xml> |
441 <xml name="param_num_categories"> | 445 <xml name="param_num_categories"> |
442 <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/> | 446 <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/> |
469 <xml name="params_inputs"> | 473 <xml name="params_inputs"> |
470 <expand macro="pl_var_names"/> | 474 <expand macro="pl_var_names"/> |
471 <expand macro="param_groupby"/> | 475 <expand macro="param_groupby"/> |
472 <expand macro="param_num_categories"/> | 476 <expand macro="param_num_categories"/> |
473 </xml> | 477 </xml> |
478 <token name="@CMD_var_names_header_check@"><![CDATA[ | |
479 header='infer' | |
480 #if $method.var_names.type == 'customfile' and $method.var_names.header == 'not_included' : | |
481 header=None | |
482 #end if | |
483 ]]></token> | |
474 <token name="@CMD_params_inputs@"><![CDATA[ | 484 <token name="@CMD_params_inputs@"><![CDATA[ |
475 #if $method.var_names.type == 'custom' | 485 #if $method.var_names.type == 'custom' |
476 #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')]) | 486 #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')]) |
477 var_names=$var_names, | 487 var_names=$var_names, |
478 #else if $method.var_names.type == 'customfile' | 488 #else if $method.var_names.type == 'customfile' |