Mercurial > repos > iuc > scater_filter

comparison README.md @ 1:b7ea9f09c02f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scater commit 61f3899168453092fd25691cf31871a3a350fd3b"
author iuc
date Tue, 03 Sep 2019 14:27:39 -0400
parents e6ca62ac65c6
children 7a365ec81b52
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0:e6ca62ac65c6 1:b7ea9f09c02f
17 5. Normalise data with `scater-normalize`. 17 5. Normalise data with `scater-normalize`.
18 6. Investigate other confounding factors.\ 18 6. Investigate other confounding factors.\
19 Plot the data (using PCA) and display various annotated properties of the cells using `scater-plot-pca`. 19 Plot the data (using PCA) and display various annotated properties of the cells using `scater-plot-pca`.
20 20
21 ## Command-line usage 21 ## Command-line usage
22
23 The scripts require the installation of scater and few other R/BioConductor packages. An easy way to install them is to create a [conda](https://conda.io/) environment using the `environment.yml` file distributed together with these wrappers:
24
25 ```
26 conda env create -f environment.yml
27 conda activate scater
28 ```
22 29
23 For help with any of the following scripts, run: 30 For help with any of the following scripts, run:
24 `<script-name> --help` 31 `<script-name> --help`
25 32
26 --- 33 ---