Mercurial > repos > iuc > scater_plot_dist_scatter

comparison scater-plot-dist-scatter.xml @ 2:81e5bdff4853 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scater commit 154318f74839a4481c7c68993c4fb745842c4cce"
author iuc
date Thu, 09 Sep 2021 12:23:33 +0000
parents 2e41b35b5bdd
children
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1:2e41b35b5bdd 2:81e5bdff4853
1 <tool id="scater_plot_dist_scatter" name="Scater: plot library QC" version="@TOOL_VERSION@"> 1 <tool id="scater_plot_dist_scatter" name="Scater: plot library QC" version="@TOOL_VERSION@" profile="@PROFILE@">
2 <description>Create plots to visualise library size, feature counts and mito gene expression</description> 2 <description>to visualise library size, feature counts and mito gene expression</description>
3 <expand macro="bio_tools"/>
3 <macros> 4 <macros>
4 <import>macros.xml</import> 5 <import>macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="requirements"> 7 <expand macro="requirements">
7 <requirement type="package" version="0.2.2">r-ggpubr</requirement> 8 <requirement type="package" version="0.4.0">r-ggpubr</requirement>
8 <requirement type="package" version="1.0.0">r-scales</requirement> 9 <requirement type="package" version="1.1.1">r-scales</requirement>
9 </expand> 10 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
11 Rscript '$__tool_directory__/scater-plot-dist-scatter.R' 12 Rscript '$__tool_directory__/scater-plot-dist-scatter.R'
12 -i '$input_loom' 13 -i '$input_loom'
13 -o '$output_plot' 14 -o '$output_plot'