Mercurial > repos > iuc > scater_plot_dist_scatter
diff scater-plot-dist-scatter.xml @ 1:2e41b35b5bdd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scater commit 61f3899168453092fd25691cf31871a3a350fd3b"
author | iuc |
---|---|
date | Tue, 03 Sep 2019 14:25:32 -0400 |
parents | 4887c4c69847 |
children | 81e5bdff4853 |
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--- a/scater-plot-dist-scatter.xml Thu Jul 18 11:12:33 2019 -0400 +++ b/scater-plot-dist-scatter.xml Tue Sep 03 14:25:32 2019 -0400 @@ -4,15 +4,18 @@ <import>macros.xml</import> </macros> <expand macro="requirements"> - <requirement type="package" version="0.2.1">r-ggpubr</requirement> + <requirement type="package" version="0.2.2">r-ggpubr</requirement> + <requirement type="package" version="1.0.0">r-scales</requirement> </expand> <command detect_errors="exit_code"><![CDATA[ Rscript '$__tool_directory__/scater-plot-dist-scatter.R' -i '$input_loom' -o '$output_plot' +$plot_log ]]></command> <inputs> <param name="input_loom" type="data" format="loom" label="Input SingleCellLoomExperiment dataset" /> + <param name="plot_log" type="boolean" truevalue="--log-scale" falsevalue="" label="Plot on log scale" help="Recommended for large datasets" /> </inputs> <outputs> <data name="output_plot" format="pdf" label="${tool.name} on ${on_string}" /> @@ -20,8 +23,14 @@ <tests> <test> <param name="input_loom" value="scater_qcready.loom" ftype="loom" /> + <param name="plot_log" value="false"/> <output name="output_plot" file="scater_reads_genes_dist.pdf" compare="sim_size" /> </test> + <test> + <param name="input_loom" value="scater_qcready.loom" ftype="loom" /> + <param name="plot_log" value="true"/> + <output name="output_plot" file="scater_reads_genes_dist_log.pdf" compare="sim_size" /> + </test> </tests> <help><![CDATA[ Plot distribution of reads and features for single-cell RNA-seq analysis using Scater.