Mercurial > repos > iuc > schicexplorer_schicclustercompartments

annotate test-data/scHicQualityControl/qc_report.txt @ 0:5426f006d7ed draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
author iuc
date Sat, 25 Jan 2020 04:38:26 -0500
parents
children 0bc84d7d94d4
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5426f006d7ed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff changeset
1 # QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev
5426f006d7ed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff changeset
2 scHi-C sample contained 20 cells:
5426f006d7ed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff changeset
3 Number of removed matrices containing bad chromosomes 0
5426f006d7ed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff changeset
4 Number of removed matrices due to low read coverage (< 100000): 8
5426f006d7ed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff changeset
5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0
5426f006d7ed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff changeset
6 12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore.