Mercurial > repos > iuc > schicexplorer_schicclustercompartments
annotate test-data/scHicQualityControl/qc_report.txt @ 2:54b6cef88a7f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
author | iuc |
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date | Fri, 14 Apr 2023 14:25:07 +0000 |
parents | 0bc84d7d94d4 |
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0bc84d7d94d4
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
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1 # QC report for single-cell Hi-C data generated by scHiCExplorer 4 |
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5426f006d7ed
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
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2 scHi-C sample contained 20 cells: |
5426f006d7ed
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
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3 Number of removed matrices containing bad chromosomes 0 |
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0bc84d7d94d4
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
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0
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changeset
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4 Number of removed matrices due to low read coverage (< 100000): 10 |
0
5426f006d7ed
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit c41cef1b9acefdbdbd52996458fdee743ca5c0a6"
iuc
parents:
diff
changeset
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5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 |
1
0bc84d7d94d4
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
parents:
0
diff
changeset
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6 10 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. |