Mercurial > repos > iuc > schicexplorer_schiccorrectmatrices
annotate test-data/scHicQualityControl/qc_report.txt @ 0:104bedd292cd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
author | iuc |
---|---|
date | Wed, 29 Jan 2020 17:07:16 -0500 |
parents | |
children | 16dda99bd733 |
rev | line source |
---|---|
0
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
1 # QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev |
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
2 scHi-C sample contained 20 cells: |
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
3 Number of removed matrices containing bad chromosomes 0 |
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
4 Number of removed matrices due to low read coverage (< 100000): 8 |
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 |
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
6 12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. |