Mercurial > repos > iuc > schicexplorer_schiccorrectmatrices
annotate test-data/scHicQualityControl/qc_report.txt @ 2:295558e266d0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
author | iuc |
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date | Fri, 14 Apr 2023 14:21:12 +0000 |
parents | 16dda99bd733 |
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16dda99bd733
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
parents:
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1 # QC report for single-cell Hi-C data generated by scHiCExplorer 4 |
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104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
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2 scHi-C sample contained 20 cells: |
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
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3 Number of removed matrices containing bad chromosomes 0 |
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16dda99bd733
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
parents:
0
diff
changeset
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4 Number of removed matrices due to low read coverage (< 100000): 10 |
0
104bedd292cd
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 0536fdef4cfc6315a0730b55f766e31d1986bedb"
iuc
parents:
diff
changeset
|
5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 |
1
16dda99bd733
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
parents:
0
diff
changeset
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6 10 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. |