Mercurial > repos > iuc > schicexplorer_schiccorrectmatrices

comparison macros.xml @ 1:16dda99bd733 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
author iuc
date Tue, 10 Mar 2020 15:14:37 -0400
parents 104bedd292cd
children 295558e266d0
comparison
equal deleted inserted replaced
0:104bedd292cd 1:16dda99bd733
1 <macros> 1 <macros>
2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
3 <token name="@WRAPPER_VERSION@">1</token> 3 <token name="@WRAPPER_VERSION@">4</token>
4 4
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement> 7 <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement>
8 <yield /> 8 <yield />
9 </requirements> 9 </requirements>
10 <version_command>@BINARY@ --version</version_command> 10 <version_command>@BINARY@ --version</version_command>
11 </xml> 11 </xml>
12 <xml name='matrix_mcooler_macro'> 12 <xml name='matrix_scooler_macro'>
13 <param name='matrix_mcooler' type="data" format="mcool" 13 <param name='matrix_scooler' type="data" format="scool"
14 label="Matrix to compute on"/> 14 label="Matrix to compute on"/>
15 </xml> 15 </xml>
16 <xml name='matrix_cooler_multiple_macro'> 16 <xml name='matrix_cooler_multiple_macro'>
17 <param name='matrix_cooler_multiple' type="data" format="cool" 17 <param name='matrix_cooler_multiple' type="data" format="cool"
18 label="Matricies to compute on" multiple="true"/> 18 label="Matricies to compute on" multiple="true"/>
19 </xml> 19 </xml>
20 <token name="@ESCAPE_IDENTIFIER_FASTQ@"><![CDATA[re.sub('[^\s\w\.]', '_', str($fastq.element_identifier))]]></token> 20 <token name="@ESCAPE_IDENTIFIER_FASTQ@"><![CDATA[re.sub('[^\s\w\.]', '_', str($fastq.element_identifier))]]></token>
21 <token name="@ESCAPE_IDENTIFIER_MCOOL@"><![CDATA[re.sub('[^\s\w\.]', '_', str($matrix_mcooler.element_identifier))]]></token> 21 <token name="@ESCAPE_IDENTIFIER_SCOOL@"><![CDATA[re.sub('[^\s\w\.]', '_', str($matrix_scooler.element_identifier))]]></token>
22 <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token> 22 <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token>
23 23
24 <xml name="citations"> 24 <xml name="citations">
25 <citations> 25 <citations>
26 <citation type="doi">https://github.com/joachimwolff/scHiCExplorer</citation> 26 <citation type="doi">https://github.com/joachimwolff/scHiCExplorer</citation>