Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix

comparison scHicCreateBulkMatrix.xml @ 1:acb3ed49109e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
author iuc
date Fri, 14 Apr 2023 14:30:33 +0000
parents ec29352b062f
children
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0:ec29352b062f 1:acb3ed49109e
1 <tool id="schicexplorer_schiccreatebulkmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0"> 1 <tool id="schicexplorer_schiccreatebulkmatrix" name="@BINARY@" version="@TOOL_VERSION@.1" profile="@PROFILE@">
2 <description>creates the bulk matrix out of single-cell Hi-C interaction matrices</description> 2 <description>creates the bulk matrix out of single-cell Hi-C interaction matrices</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">scHicCreateBulkMatrix</token> 4 <token name="@BINARY@">scHicCreateBulkMatrix</token>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
18 <inputs> 18 <inputs>
19 19
20 <expand macro="matrix_scooler_macro"/> 20 <expand macro="matrix_scooler_macro"/>
21 </inputs> 21 </inputs>
22 <outputs> 22 <outputs>
23 <data name="outFileName" from_work_dir="bulk_matrix.cool" format="cool" label="${tool.name} on ${on_string}: Bulk matrix"/> 23 <data name="outFileName" from_work_dir="bulk_matrix.cool" format="scool" label="${tool.name} on ${on_string}: Bulk matrix"/>
24 </outputs> 24 </outputs>
25 <tests> 25 <tests>
26 <test> 26 <test>
27 <param name='matrix_scooler' value='test_matrix.scool' /> 27 <param name='matrix_scooler' value='test_matrix.scool' />
28 <output name="outFileName" file="scHicCreateBulkMatrix/bulk_matrix.cool" ftype="cool" compare="sim_size" delta="4000"/> 28 <output name="outFileName" file="scHicCreateBulkMatrix/bulk_matrix.cool" ftype="scool" compare="sim_size" delta="4000"/>
29 </test> 29 </test>
30 </tests> 30 </tests>
31 <help><![CDATA[ 31 <help><![CDATA[
32 32
33 Create bulk matrix 33 Create bulk matrix