Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix

comparison scHicCreateBulkMatrix.xml @ 0:ec29352b062f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
author iuc
date Tue, 10 Mar 2020 15:12:00 -0400
parents
children acb3ed49109e
comparison
equal deleted inserted replaced
-1:000000000000 0:ec29352b062f
1 <tool id="schicexplorer_schiccreatebulkmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0">
2 <description>creates the bulk matrix out of single-cell Hi-C interaction matrices</description>
3 <macros>
4 <token name="@BINARY@">scHicCreateBulkMatrix</token>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements" />
8 <command detect_errors="exit_code"><![CDATA[
9 @BINARY@
10
11 --matrix '$matrix_scooler'
12
13 --outFileName bulk_matrix.cool
14
15 --threads @THREADS@
16
17 ]]></command>
18 <inputs>
19
20 <expand macro="matrix_scooler_macro"/>
21 </inputs>
22 <outputs>
23 <data name="outFileName" from_work_dir="bulk_matrix.cool" format="cool" label="${tool.name} on ${on_string}: Bulk matrix"/>
24 </outputs>
25 <tests>
26 <test>
27 <param name='matrix_scooler' value='test_matrix.scool' />
28 <output name="outFileName" file="scHicCreateBulkMatrix/bulk_matrix.cool" ftype="cool" compare="sim_size" delta="4000"/>
29 </test>
30 </tests>
31 <help><![CDATA[
32
33 Create bulk matrix
34 ==================
35
36 scHicCreateBulkMatrix adds all available single-cell matrices of a scool file together and writes it as a single matrix to a cool file.
37
38 For more information about scHiCExplorer please consider our documentation on readthedocs.io_
39
40 .. _readthedocs.io: http://schicexplorer.readthedocs.io/
41 ]]></help>
42 <expand macro="citations" />
43
44 </tool>