--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scHicCreateBulkMatrix.xml	Tue Mar 10 15:12:00 2020 -0400
@@ -0,0 +1,44 @@
+<tool id="schicexplorer_schiccreatebulkmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0">
+    <description>creates the bulk matrix out of  single-cell Hi-C interaction matrices</description>
+    <macros>
+        <token name="@BINARY@">scHicCreateBulkMatrix</token>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="exit_code"><![CDATA[
+        @BINARY@
+
+        --matrix '$matrix_scooler'
+
+        --outFileName bulk_matrix.cool
+
+        --threads @THREADS@
+
+    ]]></command>
+    <inputs>
+        
+        <expand macro="matrix_scooler_macro"/>
+    </inputs>
+    <outputs>
+        <data name="outFileName" from_work_dir="bulk_matrix.cool" format="cool" label="${tool.name} on ${on_string}: Bulk matrix"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name='matrix_scooler' value='test_matrix.scool' />
+            <output name="outFileName" file="scHicCreateBulkMatrix/bulk_matrix.cool" ftype="cool" compare="sim_size" delta="4000"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+
+Create bulk matrix
+==================
+
+scHicCreateBulkMatrix adds all available single-cell matrices of a scool file together and writes it as a single matrix to a cool file.
+
+For more information about scHiCExplorer please consider our documentation on readthedocs.io_
+
+.. _readthedocs.io: http://schicexplorer.readthedocs.io/
+]]></help>
+    <expand macro="citations" />
+
+</tool>