Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix

diff test-data/scHicQualityControl/qc_report.txt @ 0:ec29352b062f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
author iuc
date Tue, 10 Mar 2020 15:12:00 -0400
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+++ b/test-data/scHicQualityControl/qc_report.txt	Tue Mar 10 15:12:00 2020 -0400
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+# QC report for single-cell Hi-C data generated by scHiCExplorer 4
+scHi-C sample contained 20 cells:
+Number of removed matrices containing bad chromosomes 0
+Number of removed matrices due to low read coverage (< 100000): 10
+Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0
+10 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore.
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