Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix

diff test-data/scHicQualityControl/qc_report_chr1_chr2.txt @ 0:ec29352b062f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
author iuc
date Tue, 10 Mar 2020 15:12:00 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/scHicQualityControl/qc_report_chr1_chr2.txt	Tue Mar 10 15:12:00 2020 -0400
@@ -0,0 +1,6 @@
+# QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev
+scHi-C sample contained 20 cells:
+Number of removed matrices containing bad chromosomes 0
+Number of removed matrices due to low read coverage (< 100000): 8
+Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0
+12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore.
\ No newline at end of file