Mercurial > repos > iuc > schicexplorer_schiccreatebulkmatrix

changeset 1:acb3ed49109e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
author iuc
date Fri, 14 Apr 2023 14:30:33 +0000
parents ec29352b062f
children
files macros.xml scHicCreateBulkMatrix.xml
diffstat 2 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Mar 10 15:12:00 2020 -0400
+++ b/macros.xml	Fri Apr 14 14:30:33 2023 +0000
@@ -1,10 +1,11 @@
 <macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
-    <token name="@WRAPPER_VERSION@">4</token>
+    <token name="@TOOL_VERSION@">4</token>
+    <token name="@PROFILE@">22.05</token>
 
      <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">schicexplorer</requirement>
             <yield />
         </requirements>
         <version_command>@BINARY@ --version</version_command>
--- a/scHicCreateBulkMatrix.xml	Tue Mar 10 15:12:00 2020 -0400
+++ b/scHicCreateBulkMatrix.xml	Fri Apr 14 14:30:33 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="schicexplorer_schiccreatebulkmatrix" name="@BINARY@" version="@WRAPPER_VERSION@.0">
+<tool id="schicexplorer_schiccreatebulkmatrix" name="@BINARY@" version="@TOOL_VERSION@.1" profile="@PROFILE@">
     <description>creates the bulk matrix out of  single-cell Hi-C interaction matrices</description>
     <macros>
         <token name="@BINARY@">scHicCreateBulkMatrix</token>
@@ -20,12 +20,12 @@
         <expand macro="matrix_scooler_macro"/>
     </inputs>
     <outputs>
-        <data name="outFileName" from_work_dir="bulk_matrix.cool" format="cool" label="${tool.name} on ${on_string}: Bulk matrix"/>
+        <data name="outFileName" from_work_dir="bulk_matrix.cool" format="scool" label="${tool.name} on ${on_string}: Bulk matrix"/>
     </outputs>
     <tests>
         <test>
             <param name='matrix_scooler' value='test_matrix.scool' />
-            <output name="outFileName" file="scHicCreateBulkMatrix/bulk_matrix.cool" ftype="cool" compare="sim_size" delta="4000"/>
+            <output name="outFileName" file="scHicCreateBulkMatrix/bulk_matrix.cool" ftype="scool" compare="sim_size" delta="4000"/>
         </test>
     </tests>
     <help><![CDATA[