Mercurial > repos > iuc > schicexplorer_schicinfo

comparison test-data/scHicQualityControl/qc_report.txt @ 1:09f8be8a6e76 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
author iuc
date Tue, 10 Mar 2020 15:10:08 -0400
parents 35c211c5146d
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comparison
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0:35c211c5146d 1:09f8be8a6e76
1 # QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev 1 # QC report for single-cell Hi-C data generated by scHiCExplorer 4
2 scHi-C sample contained 20 cells: 2 scHi-C sample contained 20 cells:
3 Number of removed matrices containing bad chromosomes 0 3 Number of removed matrices containing bad chromosomes 0
4 Number of removed matrices due to low read coverage (< 100000): 8 4 Number of removed matrices due to low read coverage (< 100000): 10
5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0
6 12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. 6 10 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore.