Mercurial > repos > iuc > schicexplorer_schicmergematrixbins
view scHicMergeMatrixBins.xml @ 0:18ac7f83ae0e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 16:03:51 -0500 |
| parents | |
| children | ecae4e42d40a |
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<tool id="schicexplorer_schicmergematrixbins" name="@BINARY@" version="@WRAPPER_VERSION@.0"> <description>change the resolution of the scHi-C matrices</description> <macros> <token name="@BINARY@">scHicMergeMatrixBins</token> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ @BINARY@ --matrix '$matrix_mcooler' --numBins $numberOfBins #if $runningWindow: $runningWindow #end if --outFileName merged_matrices.mcool --threads @THREADS@ ]]></command> <inputs> <expand macro="matrix_mcooler_macro"/> <param name="numberOfBins" type="integer" value="10" label="Number of bins to merge" help='Number of bins to merge to achieve the desired resolution. For example: To merge a 10kb matrix to 1MB, 10kb * 100 = 1MB i.e. the value needs to be 100.' /> <param name='runningWindow' type='boolean' truevalue='--runningWindow' label='Running window' help='Set to merge for using a running window of length --numBins. Must be an odd number.'/> </inputs> <outputs> <data name="outFileName" from_work_dir="merged_matrices.mcool" format="mcool" label="${tool.name} on ${on_string}: Adjusted matrix"/> </outputs> <tests> <test> <param name='matrix_mcooler' value='test_matrix.mcool' /> <param name='numberOfBins' value='10' /> <output name="outFileName" ftype="mcool"> <assert_contents> <has_h5_keys keys='Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/end, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/start, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels, 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Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/count, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/end, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/name, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/count'/> </assert_contents> </output> </test> <test> <param name='matrix_mcooler' value='test_matrix.mcool' /> <param name='numberOfBins' value='11' /> <param name='runningWindow' value='true' /> <output name="outFileName" ftype="mcool"> <assert_contents> <has_h5_keys keys='Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/end, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/start, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/end, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/start, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/end, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/start, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/end, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/start, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/count, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/start, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/count, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/start, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms/length, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/count, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/chrom, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/start, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms/length, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes/chrom_offset, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/bin1_id, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/count, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/end, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/name, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/count'/> </assert_contents> </output> </test> </tests> <help><![CDATA[ Change the resolution of the scHi-C matrices ============================================ Merges bins from a Hi-C matrix. For example, using a matrix containing 5kb bins, a matrix of 50kb bins can be derived using --numBins 10. For more information about scHiCExplorer please consider our documentation on readthedocs.io_ .. _readthedocs.io: http://schicexplorer.readthedocs.io/ ]]></help> <expand macro="citations" /> </tool>