Mercurial > repos > iuc > schicexplorer_schicmergetomcool
comparison test-data/scHicQualityControl/qc_report_chr1_chr2.txt @ 0:45a38d0a0ee6 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
| author | iuc |
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| date | Thu, 23 Jan 2020 16:06:37 -0500 |
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| -1:000000000000 | 0:45a38d0a0ee6 |
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| 1 # QC report for single-cell Hi-C data generated by scHiCExplorer 1-dev | |
| 2 scHi-C sample contained 20 cells: | |
| 3 Number of removed matrices containing bad chromosomes 0 | |
| 4 Number of removed matrices due to low read coverage (< 100000): 8 | |
| 5 Number of removed matrices due to too many zero bins (< 0.001 density, within 30000000 relative genomic distance): 0 | |
| 6 12 samples passed the quality control. Please consider matrices with a low read coverage may be the matrices with a low density and overlap therefore. |