Mercurial > repos > iuc > schicexplorer_schicqualitycontrol
changeset 2:4a841ab67e3b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
| author | iuc |
|---|---|
| date | Fri, 14 Apr 2023 14:22:47 +0000 |
| parents | 5f2eacae0bb8 |
| children | |
| files | macros.xml scHicQualityControl.xml |
| diffstat | 2 files changed, 8 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Tue Mar 10 15:15:17 2020 -0400 +++ b/macros.xml Fri Apr 14 14:22:47 2023 +0000 @@ -1,10 +1,11 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> - <token name="@WRAPPER_VERSION@">4</token> + <token name="@TOOL_VERSION@">4</token> + <token name="@PROFILE@">22.05</token> <xml name="requirements"> <requirements> - <requirement type="package" version="@WRAPPER_VERSION@">schicexplorer</requirement> + <requirement type="package" version="@TOOL_VERSION@">schicexplorer</requirement> <yield /> </requirements> <version_command>@BINARY@ --version</version_command>
--- a/scHicQualityControl.xml Tue Mar 10 15:15:17 2020 -0400 +++ b/scHicQualityControl.xml Fri Apr 14 14:22:47 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="schicexplorer_schicqualitycontrol" name="@BINARY@" version="@WRAPPER_VERSION@.0"> +<tool id="schicexplorer_schicqualitycontrol" name="@BINARY@" version="@TOOL_VERSION@.1" profile="@PROFILE@"> <description>quality control for single-cell Hi-C interaction matrices</description> <macros> <token name="@BINARY@">scHicQualityControl</token> @@ -6,9 +6,12 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ + ## https://github.com/open2c/cooler/issues/299 + cp '$matrix_scooler' matrix.scooler && + @BINARY@ - --matrix '$matrix_scooler' + --matrix matrix.scooler #if $chromosomes: #set $chromosome = ' '.join([ '\'%s\'' % $chrom for $chrom in str($chromosomes).split(' ') ]) --chromosomes $chromosome