Mercurial > repos > iuc > scoary

comparison test-data/scoary_output_2.tsv @ 0:42a1a5750539 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scoary commit ce823d6021a7afbc2c49ba60e32faababaffd870"
author iuc
date Sun, 21 Mar 2021 12:21:41 +0000
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-1:000000000000 0:42a1a5750539
1 ==> Bogus_trait.results.csv <==
2 "Gene" "Non-unique Gene name" "Annotation" "Number_pos_present_in" "Number_neg_present_in" "Number_pos_not_present_in" "Number_neg_not_present_in" "Sensitivity" "Specificity" "Odds_ratio" "Naive_p" "Bonferroni_p" "Benjamini_H_p" "Max_Pairwise_comparisons" "Max_supporting_pairs" "Max_opposing_pairs" "Best_pairwise_comp_p" "Worst_pairwise_comp_p"
3 "gene_6942" "" "A gene with no relevance to tetracycline resistance" "18" "32" "35" "12" "33.9622641509434" "27.27272727272727" "0.19285714285714287" "0.00021060616542660472" "1.0" "1.0" "22" "5" "20" "0.00012111663818359382" "0.016900539398193356"
4 "gene_3729" "" "A gene with no relevance to tetracycline resistance" "14" "24" "39" "20" "26.41509433962264" "45.45454545454545" "0.29914529914529914" "0.0065460411579812364" "1.0" "1.0" "21" "5" "17" "0.0071973800659179705" "0.026603698730468753"
5 "gene_5224" "" "A gene with no relevance to tetracycline resistance" "26" "12" "27" "32" "49.056603773584904" "72.72727272727273" "2.567901234567901" "0.03714290661271735" "1.0" "1.0" "17" "15" "4" "0.002349853515625" "0.049041748046874986"
6
7 ==> Tetracycline_resistance.results.csv <==
8 "Gene" "Non-unique Gene name" "Annotation" "Number_pos_present_in" "Number_neg_present_in" "Number_pos_not_present_in" "Number_neg_not_present_in" "Sensitivity" "Specificity" "Odds_ratio" "Naive_p" "Bonferroni_p" "Benjamini_H_p" "Max_Pairwise_comparisons" "Max_supporting_pairs" "Max_opposing_pairs" "Best_pairwise_comp_p" "Worst_pairwise_comp_p"
9 "TetRCG" "" "A fictitious gene known to cause resistance against tetracycline" "29" "8" "3" "60" "90.625" "88.23529411764706" "72.5" "1.0862106610751666e-14" "6.45209132678649e-11" "6.45209132678649e-11" "25" "25" "1" "5.960464477539063e-08" "1.5497207641601558e-06"
10 "gene_6012" "" "A gene with no relevance to tetracycline resistance" "27" "33" "5" "35" "84.375" "51.470588235294116" "5.7272727272727275" "0.0008645575374418531" "1.0" "0.40703322054963476" "20" "17" "5" "0.002576828002929687" "0.04138946533203125"
11 "gene_8999" "" "A gene with no relevance to tetracycline resistance" "27" "33" "5" "35" "84.375" "51.470588235294116" "5.7272727272727275" "0.0008645575374418531" "1.0" "0.40703322054963476" "22" "18" "5" "0.004343509674072266" "0.016900539398193356"
12 "gene_5447" "" "A gene with no relevance to tetracycline resistance" "5" "33" "27" "35" "15.625" "51.470588235294116" "0.19640852974186307" "0.0018172689092071626" "1.0" "0.46422476150565434" "21" "5" "19" "0.00022125244140625" "0.026603698730468753"
13 "gene_7634" "" "A gene with no relevance to tetracycline resistance" "12" "48" "20" "20" "37.5" "29.411764705882355" "0.25" "0.0022133680087893675" "1.0" "0.46422476150565434" "19" "4" "18" "7.62939453125e-05" "0.019210815429687503"
14 "gene_6122" "" "A gene with no relevance to tetracycline resistance" "8" "39" "24" "29" "25.0" "42.64705882352941" "0.24786324786324787" "0.0028134834030645707" "1.0" "0.46422476150565434" "20" "5" "16" "0.011817932128906248" "0.04138946533203125"
15 "gene_8059" "" "A gene with no relevance to tetracycline resistance" "24" "29" "8" "39" "75.0" "57.35294117647059" "4.0344827586206895" "0.0028134834030645716" "1.0" "0.46422476150565434" "21" "17" "5" "0.0071973800659179705" "0.026603698730468753"
16 "gene_8605" "" "A gene with no relevance to tetracycline resistance" "24" "31" "8" "37" "75.0" "54.41176470588235" "3.5806451612903225" "0.009189307337123247" "1.0" "0.5783687387971439" "22" "20" "5" "0.00012111663818359382" "0.016900539398193356"
17 "gene_4838" "" "A gene with no relevance to tetracycline resistance" "9" "38" "23" "30" "28.125" "44.11764705882353" "0.30892448512585813" "0.010775926587020253" "1.0" "0.5872385681367001" "22" "5" "18" "0.004343509674072266" "0.016900539398193356"
18 "gene_4048" "" "A gene with no relevance to tetracycline resistance" "15" "50" "17" "18" "46.875" "26.47058823529412" "0.3176470588235294" "0.013224151736154797" "1.0" "0.6416380377968907" "20" "5" "16" "0.011817932128906248" "0.04138946533203125"
19 "gene_5164" "" "A gene with no relevance to tetracycline resistance" "6" "30" "26" "38" "18.75" "55.88235294117647" "0.2923076923076923" "0.014990405659144048" "1.0" "0.6416380377968907" "20" "5" "16" "0.011817932128906248" "0.04138946533203125"
20 "gene_3566" "" "A gene with no relevance to tetracycline resistance" "7" "32" "25" "36" "21.875" "52.94117647058824" "0.315" "0.017224467186043528" "1.0" "0.6416380377968907" "20" "5" "16" "0.011817932128906248" "0.04138946533203125"
21 "gene_7366" "" "A gene with no relevance to tetracycline resistance" "10" "39" "22" "29" "31.25" "42.64705882352941" "0.337995337995338" "0.01871864669744245" "1.0" "0.6416380377968907" "24" "6" "18" "0.02265584468841553" "0.02265584468841553"
22 "gene_6471" "" "A gene with no relevance to tetracycline resistance" "5" "27" "27" "41" "15.625" "60.29411764705882" "0.2812071330589849" "0.021064705280855585" "1.0" "0.7069172280693907" "14" "2" "14" "0.0001220703125" "0.012939453124999998"
23 "gene_4300" "" "A gene with no relevance to tetracycline resistance" "25" "37" "7" "31" "78.125" "45.588235294117645" "2.9922779922779923" "0.02775538417436529" "1.0" "0.7137686008678433" "19" "17" "4" "0.0007286071777343752" "0.019210815429687503"
24 "gene_8285" "" "A gene with no relevance to tetracycline resistance" "7" "31" "25" "37" "21.875" "54.41176470588235" "0.33419354838709675" "0.02775538417436529" "1.0" "0.7137686008678433" "20" "5" "17" "0.002576828002929687" "0.04138946533203125"
25 "gene_6253" "" "A gene with no relevance to tetracycline resistance" "24" "36" "8" "32" "75.0" "47.05882352941176" "2.6666666666666665" "0.048738926902935104" "1.0" "0.7548757656770544" "21" "17" "5" "0.0071973800659179705" "0.026603698730468753"
26 "gene_4147" "" "A gene with no relevance to tetracycline resistance" "8" "32" "24" "36" "25.0" "52.94117647058824" "0.375" "0.048738926902935104" "1.0" "0.7548757656770544" "20" "5" "17" "0.002576828002929687" "0.04138946533203125"
27 "gene_7230" "" "A gene with no relevance to tetracycline resistance" "14" "45" "18" "23" "43.75" "33.82352941176471" "0.39753086419753086" "0.049235180840507584" "1.0" "0.7548757656770544" "20" "5" "15" "0.04138946533203125" "0.04138946533203125"