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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scoary commit 43a8ab018d2f2ab7827cfe62a8dbcf202e368e83
author iuc
date Mon, 11 Mar 2024 21:49:00 +0000
parents 42a1a5750539
children
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==> Bogus_trait.results.csv <==
"Gene"	"Non-unique Gene name"	"Annotation"	"Number_pos_present_in"	"Number_neg_present_in"	"Number_pos_not_present_in"	"Number_neg_not_present_in"	"Sensitivity"	"Specificity"	"Odds_ratio"	"Naive_p"	"Bonferroni_p"	"Benjamini_H_p"	"Max_Pairwise_comparisons"	"Max_supporting_pairs"	"Max_opposing_pairs"	"Best_pairwise_comp_p"	"Worst_pairwise_comp_p"
"gene_6942"	""	"A gene with no relevance to tetracycline resistance"	"18"	"32"	"35"	"12"	"33.9622641509434"	"27.27272727272727"	"0.19285714285714287"	"0.00021060616542660472"	"1.0"	"1.0"	"22"	"5"	"20"	"0.00012111663818359382"	"0.016900539398193356"
"gene_3729"	""	"A gene with no relevance to tetracycline resistance"	"14"	"24"	"39"	"20"	"26.41509433962264"	"45.45454545454545"	"0.29914529914529914"	"0.0065460411579812364"	"1.0"	"1.0"	"21"	"5"	"17"	"0.0071973800659179705"	"0.026603698730468753"
"gene_5224"	""	"A gene with no relevance to tetracycline resistance"	"26"	"12"	"27"	"32"	"49.056603773584904"	"72.72727272727273"	"2.567901234567901"	"0.03714290661271735"	"1.0"	"1.0"	"17"	"15"	"4"	"0.002349853515625"	"0.049041748046874986"

==> Tetracycline_resistance.results.csv <==
"Gene"	"Non-unique Gene name"	"Annotation"	"Number_pos_present_in"	"Number_neg_present_in"	"Number_pos_not_present_in"	"Number_neg_not_present_in"	"Sensitivity"	"Specificity"	"Odds_ratio"	"Naive_p"	"Bonferroni_p"	"Benjamini_H_p"	"Max_Pairwise_comparisons"	"Max_supporting_pairs"	"Max_opposing_pairs"	"Best_pairwise_comp_p"	"Worst_pairwise_comp_p"
"TetRCG"	""	"A fictitious gene known to cause resistance against tetracycline"	"29"	"8"	"3"	"60"	"90.625"	"88.23529411764706"	"72.5"	"1.0862106610751666e-14"	"6.45209132678649e-11"	"6.45209132678649e-11"	"25"	"25"	"1"	"5.960464477539063e-08"	"1.5497207641601558e-06"
"gene_6012"	""	"A gene with no relevance to tetracycline resistance"	"27"	"33"	"5"	"35"	"84.375"	"51.470588235294116"	"5.7272727272727275"	"0.0008645575374418531"	"1.0"	"0.40703322054963476"	"20"	"17"	"5"	"0.002576828002929687"	"0.04138946533203125"
"gene_8999"	""	"A gene with no relevance to tetracycline resistance"	"27"	"33"	"5"	"35"	"84.375"	"51.470588235294116"	"5.7272727272727275"	"0.0008645575374418531"	"1.0"	"0.40703322054963476"	"22"	"18"	"5"	"0.004343509674072266"	"0.016900539398193356"
"gene_5447"	""	"A gene with no relevance to tetracycline resistance"	"5"	"33"	"27"	"35"	"15.625"	"51.470588235294116"	"0.19640852974186307"	"0.0018172689092071626"	"1.0"	"0.46422476150565434"	"21"	"5"	"19"	"0.00022125244140625"	"0.026603698730468753"
"gene_7634"	""	"A gene with no relevance to tetracycline resistance"	"12"	"48"	"20"	"20"	"37.5"	"29.411764705882355"	"0.25"	"0.0022133680087893675"	"1.0"	"0.46422476150565434"	"19"	"4"	"18"	"7.62939453125e-05"	"0.019210815429687503"
"gene_6122"	""	"A gene with no relevance to tetracycline resistance"	"8"	"39"	"24"	"29"	"25.0"	"42.64705882352941"	"0.24786324786324787"	"0.0028134834030645707"	"1.0"	"0.46422476150565434"	"20"	"5"	"16"	"0.011817932128906248"	"0.04138946533203125"
"gene_8059"	""	"A gene with no relevance to tetracycline resistance"	"24"	"29"	"8"	"39"	"75.0"	"57.35294117647059"	"4.0344827586206895"	"0.0028134834030645716"	"1.0"	"0.46422476150565434"	"21"	"17"	"5"	"0.0071973800659179705"	"0.026603698730468753"
"gene_8605"	""	"A gene with no relevance to tetracycline resistance"	"24"	"31"	"8"	"37"	"75.0"	"54.41176470588235"	"3.5806451612903225"	"0.009189307337123247"	"1.0"	"0.5783687387971439"	"22"	"20"	"5"	"0.00012111663818359382"	"0.016900539398193356"
"gene_4838"	""	"A gene with no relevance to tetracycline resistance"	"9"	"38"	"23"	"30"	"28.125"	"44.11764705882353"	"0.30892448512585813"	"0.010775926587020253"	"1.0"	"0.5872385681367001"	"22"	"5"	"18"	"0.004343509674072266"	"0.016900539398193356"
"gene_4048"	""	"A gene with no relevance to tetracycline resistance"	"15"	"50"	"17"	"18"	"46.875"	"26.47058823529412"	"0.3176470588235294"	"0.013224151736154797"	"1.0"	"0.6416380377968907"	"20"	"5"	"16"	"0.011817932128906248"	"0.04138946533203125"
"gene_5164"	""	"A gene with no relevance to tetracycline resistance"	"6"	"30"	"26"	"38"	"18.75"	"55.88235294117647"	"0.2923076923076923"	"0.014990405659144048"	"1.0"	"0.6416380377968907"	"20"	"5"	"16"	"0.011817932128906248"	"0.04138946533203125"
"gene_3566"	""	"A gene with no relevance to tetracycline resistance"	"7"	"32"	"25"	"36"	"21.875"	"52.94117647058824"	"0.315"	"0.017224467186043528"	"1.0"	"0.6416380377968907"	"20"	"5"	"16"	"0.011817932128906248"	"0.04138946533203125"
"gene_7366"	""	"A gene with no relevance to tetracycline resistance"	"10"	"39"	"22"	"29"	"31.25"	"42.64705882352941"	"0.337995337995338"	"0.01871864669744245"	"1.0"	"0.6416380377968907"	"24"	"6"	"18"	"0.02265584468841553"	"0.02265584468841553"
"gene_6471"	""	"A gene with no relevance to tetracycline resistance"	"5"	"27"	"27"	"41"	"15.625"	"60.29411764705882"	"0.2812071330589849"	"0.021064705280855585"	"1.0"	"0.7069172280693907"	"14"	"2"	"14"	"0.0001220703125"	"0.012939453124999998"
"gene_4300"	""	"A gene with no relevance to tetracycline resistance"	"25"	"37"	"7"	"31"	"78.125"	"45.588235294117645"	"2.9922779922779923"	"0.02775538417436529"	"1.0"	"0.7137686008678433"	"19"	"17"	"4"	"0.0007286071777343752"	"0.019210815429687503"
"gene_8285"	""	"A gene with no relevance to tetracycline resistance"	"7"	"31"	"25"	"37"	"21.875"	"54.41176470588235"	"0.33419354838709675"	"0.02775538417436529"	"1.0"	"0.7137686008678433"	"20"	"5"	"17"	"0.002576828002929687"	"0.04138946533203125"
"gene_6253"	""	"A gene with no relevance to tetracycline resistance"	"24"	"36"	"8"	"32"	"75.0"	"47.05882352941176"	"2.6666666666666665"	"0.048738926902935104"	"1.0"	"0.7548757656770544"	"21"	"17"	"5"	"0.0071973800659179705"	"0.026603698730468753"
"gene_4147"	""	"A gene with no relevance to tetracycline resistance"	"8"	"32"	"24"	"36"	"25.0"	"52.94117647058824"	"0.375"	"0.048738926902935104"	"1.0"	"0.7548757656770544"	"20"	"5"	"17"	"0.002576828002929687"	"0.04138946533203125"
"gene_7230"	""	"A gene with no relevance to tetracycline resistance"	"14"	"45"	"18"	"23"	"43.75"	"33.82352941176471"	"0.39753086419753086"	"0.049235180840507584"	"1.0"	"0.7548757656770544"	"20"	"5"	"15"	"0.04138946533203125"	"0.04138946533203125"