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annotate tool-data/all_fasta.loc.sample @ 1:4ec6717872b1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit ffcc4ba8dcf01fd19bee6d946f9789bcf4ed680a
author iuc
date Fri, 17 Aug 2018 08:22:49 -0400
parents 32e1bfc6b7b2
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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1 #This file lists the locations and dbkeys of all the genome and transcriptome fasta files
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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2 #under the "genome" directory (a directory that contains a directory
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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3 #for each build. This file has the format (white space characters are
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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4 #TAB characters):
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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5 #
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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6 #<unique_build_id> <dbkey> <display_name> <file_path>
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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7 #
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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8 #So, all_fasta.loc could look something like this:
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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9 #
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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10 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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11 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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12 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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13 #hg19full.87 hg19 Human (Homo sapiens): hg19 Full Trans v87 /path/to/genome/hg19/hg19full.cdna.all.fa
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
parents:
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14
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
parents:
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15 #Your all_fasta.loc file should contain an entry for each individual
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
parents:
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16 #fasta file. So there will be multiple fasta files for each build,
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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17 #such as with hg19 above.
32e1bfc6b7b2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe commit 8908da9cdd112ae0943dbf1eccb221e84cd99ca7
iuc
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18 #