Mercurial > repos > iuc > semibin

diff semibin.xml @ 6:afee33334a63 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/semibin commit 2c08a2e49a2844efe92340c5a9e9c8323e4a33d6
author iuc
date Tue, 28 Oct 2025 08:18:37 +0000
parents fdb13ee4be38
children
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line diff
--- a/semibin.xml	Sun Aug 10 11:38:51 2025 +0000
+++ b/semibin.xml	Tue Oct 28 08:18:37 2025 +0000
@@ -45,7 +45,7 @@
         #end for
     #end if
 #end if
-    --input-fasta 'contigs.fasta'
+    --input-fasta 'contigs.$input_fasta.ext'
     #if $mode.select == "single":
         --input-bam *.bam
     #else:
@@ -174,7 +174,7 @@
         <test expect_num_outputs="5">
             <conditional name="mode">
                 <param name="select" value="single"/>
-                <param name="input_fasta" ftype="fasta" value="input_single.fasta"/>
+                <param name="input_fasta" ftype="fasta.gz" value="input_single.fasta.gz"/>
                 <param name="input_bam" ftype="bam" value="input_single.bam"/>
                 <conditional name="ref">
                     <param name="select" value="taxonomy"/>
@@ -225,7 +225,7 @@
         <test expect_num_outputs="5">
             <conditional name="mode">
                 <param name="select" value="single"/>
-                <param name="input_fasta" ftype="fasta" value="input_single.fasta"/>
+                <param name="input_fasta" ftype="fasta.bz2" value="input_single.fasta.bz2"/>
                 <param name="input_bam" ftype="bam" value="input_single.bam"/>
                 <conditional name="ref">
                     <param name="select" value="ml"/>