Mercurial > repos > iuc > semibin_bin
comparison bin.xml @ 1:4d561bdc2c31 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 59a7b7a334fd2c3aca6163c2ff11d18ef654ab9d
author | iuc |
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date | Mon, 27 Mar 2023 08:24:46 +0000 |
parents | 474701f91bcd |
children | dbf5571a8140 |
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0:474701f91bcd | 1:4d561bdc2c31 |
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55 <outputs> | 55 <outputs> |
56 <collection name="output_recluster_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins after reclustering"> | 56 <collection name="output_recluster_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins after reclustering"> |
57 <filter>not no_recluster</filter> | 57 <filter>not no_recluster</filter> |
58 <discover_datasets pattern=".*?\.(?P<designation>.*).fa" format="fasta" directory="output/output_recluster_bins" /> | 58 <discover_datasets pattern=".*?\.(?P<designation>.*).fa" format="fasta" directory="output/output_recluster_bins" /> |
59 </collection> | 59 </collection> |
60 <collection name="output_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins before reclustering"> | 60 <collection name="output_prerecluster_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins before reclustering"> |
61 <filter>not no_recluster</filter> | |
62 <discover_datasets pattern=".*?\.(?P<designation>.*).fa" format="fasta" directory="output/output_prerecluster_bins" /> | |
63 </collection> | |
64 <collection name="output_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins without reeclustering"> | |
65 <filter>no_recluster</filter> | |
61 <discover_datasets pattern=".*?\.(?P<designation>.*).fa" format="fasta" directory="output/output_bins" /> | 66 <discover_datasets pattern=".*?\.(?P<designation>.*).fa" format="fasta" directory="output/output_bins" /> |
62 </collection> | 67 </collection> |
63 </outputs> | 68 </outputs> |
64 <tests> | 69 <tests> |
65 <test expect_num_outputs="2"> | 70 <test expect_num_outputs="2"> |
81 <param name="max_node" value="1"/> | 86 <param name="max_node" value="1"/> |
82 <param name="max_edges" value="200"/> | 87 <param name="max_edges" value="200"/> |
83 <param name="minfasta_kbs" value="200"/> | 88 <param name="minfasta_kbs" value="200"/> |
84 <param name="no_recluster" value="false"/> | 89 <param name="no_recluster" value="false"/> |
85 <output_collection name="output_recluster_bins" count="0"/> | 90 <output_collection name="output_recluster_bins" count="0"/> |
86 <output_collection name="output_bins" count="3"> | 91 <output_collection name="output_prerecluster_bins" count="3"> |
87 <element name="0" ftype="fasta"> | 92 <element name="0" ftype="fasta"> |
88 <assert_contents> | 93 <assert_contents> |
89 <has_text text=">g1k_0"/> | 94 <has_text text=">g1k_0"/> |
90 <has_text text=">g4k_9"/> | 95 <has_text text=">g4k_9"/> |
91 </assert_contents> | 96 </assert_contents> |