Mercurial > repos > iuc > semibin_bin

comparison bin.xml @ 1:4d561bdc2c31 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 59a7b7a334fd2c3aca6163c2ff11d18ef654ab9d
author iuc
date Mon, 27 Mar 2023 08:24:46 +0000
parents 474701f91bcd
children dbf5571a8140
comparison
equal deleted inserted replaced
0:474701f91bcd 1:4d561bdc2c31
55 <outputs> 55 <outputs>
56 <collection name="output_recluster_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins after reclustering"> 56 <collection name="output_recluster_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins after reclustering">
57 <filter>not no_recluster</filter> 57 <filter>not no_recluster</filter>
58 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*).fa" format="fasta" directory="output/output_recluster_bins" /> 58 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*).fa" format="fasta" directory="output/output_recluster_bins" />
59 </collection> 59 </collection>
60 <collection name="output_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins before reclustering"> 60 <collection name="output_prerecluster_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins before reclustering">
61 <filter>not no_recluster</filter>
62 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*).fa" format="fasta" directory="output/output_prerecluster_bins" />
63 </collection>
64 <collection name="output_bins" type="list" label="${tool.name} on ${on_string}: Reconstructed bins without reeclustering">
65 <filter>no_recluster</filter>
61 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*).fa" format="fasta" directory="output/output_bins" /> 66 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*).fa" format="fasta" directory="output/output_bins" />
62 </collection> 67 </collection>
63 </outputs> 68 </outputs>
64 <tests> 69 <tests>
65 <test expect_num_outputs="2"> 70 <test expect_num_outputs="2">
81 <param name="max_node" value="1"/> 86 <param name="max_node" value="1"/>
82 <param name="max_edges" value="200"/> 87 <param name="max_edges" value="200"/>
83 <param name="minfasta_kbs" value="200"/> 88 <param name="minfasta_kbs" value="200"/>
84 <param name="no_recluster" value="false"/> 89 <param name="no_recluster" value="false"/>
85 <output_collection name="output_recluster_bins" count="0"/> 90 <output_collection name="output_recluster_bins" count="0"/>
86 <output_collection name="output_bins" count="3"> 91 <output_collection name="output_prerecluster_bins" count="3">
87 <element name="0" ftype="fasta"> 92 <element name="0" ftype="fasta">
88 <assert_contents> 93 <assert_contents>
89 <has_text text=">g1k_0"/> 94 <has_text text=">g1k_0"/>
90 <has_text text=">g4k_9"/> 95 <has_text text=">g4k_9"/>
91 </assert_contents> 96 </assert_contents>