Mercurial > repos > iuc > semibin_generate_sequence_features

comparison macros.xml @ 1:0ae1a2636de5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 59a7b7a334fd2c3aca6163c2ff11d18ef654ab9d
author iuc
date Mon, 27 Mar 2023 08:24:19 +0000
parents 07bf5268724f
children ff4e487f4f7e
comparison
equal deleted inserted replaced
0:07bf5268724f 1:0ae1a2636de5
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">1.1.1</token> 3 <token name="@TOOL_VERSION@">1.5.1</token>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 <token name="@PROFILE@">21.01</token> 5 <token name="@PROFILE@">21.01</token>
6 <xml name="biotools"> 6 <xml name="biotools">
7 <xrefs> 7 <xrefs>
8 <xref type="bio.tools">semibin</xref> 8 <xref type="bio.tools">semibin</xref>
280 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> 280 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter>
281 </data> 281 </data>
282 <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)"> 282 <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)">
283 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter> 283 <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter>
284 </data> 284 </data>
285 <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage"> 285 <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage (co_cov)">
286 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> 286 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter>
287 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_cov\.csv" format="csv" directory="output/" /> 287 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_cov\.csv" format="csv" directory="output/" />
288 </collection> 288 </collection>
289 <collection name="co_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> 289 <collection name="co_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample">
290 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter> 290 <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter>
291 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_split_cov\.csv" format="csv" directory="output/" /> 291 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_split_cov\.csv" format="csv" directory="output/" />
292 </collection> 292 </collection>
293 <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage"> 293 <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage (multi_cov)">
294 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> 294 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
295 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_cov.csv" format="csv" directory="output/samples/" /> 295 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_cov.csv" format="csv" directory="output/samples/" />
296 </collection> 296 </collection>
297 <collection name="multi_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage per sample"> 297 <collection name="multi_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage per sample">
298 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> 298 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
299 <discover_datasets pattern="(?P&lt;designation&gt;.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> 299 <discover_datasets pattern="(?P&lt;designation&gt;.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/>
300 </collection> 300 </collection>
301 <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> 301 <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov)">
302 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> 302 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
303 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_split_cov.csv" format="csv" directory="output/samples/" /> 303 <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_split_cov.csv" format="csv" directory="output/samples/" />
304 </collection> 304 </collection>
305 <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample"> 305 <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov_sample)">
306 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter> 306 <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
307 <discover_datasets pattern="(?P&lt;designation&gt;.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/> 307 <discover_datasets pattern="(?P&lt;designation&gt;.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/>
308 </collection> 308 </collection>
309 <collection name="multi_contigs" type="list" label="${tool.name} on ${on_string}: Contigs"> 309 <collection name="multi_contigs" type="list" label="${tool.name} on ${on_string}: Contigs">
310 <filter>mode["select"]=="multi" and extra_output and "contigs" in extra_output</filter> 310 <filter>mode["select"]=="multi" and extra_output and "contigs" in extra_output</filter>