Mercurial > repos > iuc > semibin_train

changeset 1:43df7a4c33a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 59a7b7a334fd2c3aca6163c2ff11d18ef654ab9d
author iuc
date Mon, 27 Mar 2023 08:26:09 +0000
parents 08cc1cd58f38
children 8b77643cf479
files macros.xml train.xml
diffstat 2 files changed, 9 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Oct 14 21:42:14 2022 +0000
+++ b/macros.xml	Mon Mar 27 08:26:09 2023 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">1.1.1</token>
+    <token name="@TOOL_VERSION@">1.5.1</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="biotools">
@@ -282,7 +282,7 @@
         <data name="single_split_cov" format="csv" from_work_dir="output/*_data_split_cov.csv" label="${tool.name} on ${on_string}: Coverage (split data)">
             <filter>mode["select"]=="single" and extra_output and "coverage" in extra_output</filter>
         </data>
-        <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage">
+        <collection name="co_cov" type="list" label="${tool.name} on ${on_string}: Coverage (co_cov)">
             <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter>
             <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_cov\.csv" format="csv" directory="output/" />
         </collection>
@@ -290,7 +290,7 @@
             <filter>mode["select"]=="co" and extra_output and "coverage" in extra_output</filter>
             <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_split_cov\.csv" format="csv" directory="output/" />
         </collection>
-        <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage">
+        <collection name="multi_cov" type="list" label="${tool.name} on ${on_string}: Coverage (multi_cov)">
             <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
             <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_cov.csv" format="csv" directory="output/samples/" />
         </collection>
@@ -298,11 +298,11 @@
             <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
             <discover_datasets pattern="(?P&lt;designation&gt;.*)\/data_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/>
         </collection>
-        <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample">
+        <collection name="multi_split_cov" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov)">
             <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
             <discover_datasets pattern=".*\.bam_(?P&lt;designation&gt;.*)_data_split_cov.csv" format="csv" directory="output/samples/" />
         </collection>
-        <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample">
+        <collection name="multi_split_cov_sample" type="list" label="${tool.name} on ${on_string}: Coverage (split data) per sample (multi_split_cov_sample)">
             <filter>mode["select"]=="multi" and extra_output and "coverage" in extra_output</filter>
             <discover_datasets pattern="(?P&lt;designation&gt;.*)\/data_split_cov.csv" format="csv" directory="output/samples/" recurse="true" match_relative_path="true"/>
         </collection>
@@ -348,4 +348,4 @@
             <citation type="doi">10.1038/s41467-022-29843-y</citation>
         </citations>
     </xml>
-</macros>
\ No newline at end of file
+</macros>
--- a/train.xml	Fri Oct 14 21:42:14 2022 +0000
+++ b/train.xml	Mon Mar 27 08:26:09 2023 +0000
@@ -106,7 +106,7 @@
             <param name="batch_size" value="2048"/>
             <output name="model" ftype="h5">
                 <assert_contents>
-                    <has_size value="3119000" delta="1000" />
+                    <has_size value="3119000" delta="2000" />
                 </assert_contents>
             </output>
         </test>
@@ -128,7 +128,7 @@
             <param name="batch_size" value="2048"/>
             <output name="model" ftype="h5">
                 <assert_contents>
-                    <has_size value="3119000" delta="1000" />
+                    <has_size value="3119000" delta="2000" />
                 </assert_contents>
             </output>
         </test>
@@ -151,4 +151,4 @@
 @HELP_MODEL@
     ]]></help>
     <expand macro="citations"/>
-</tool>
\ No newline at end of file
+</tool>