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comparison seqtk_fqchk.xml @ 9:4b494533146a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6
author iuc
date Sat, 09 Dec 2023 11:14:21 +0000
parents 3da72230c066
children
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8:3da72230c066 9:4b494533146a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_fqchk" name="seqtk_fqchk" version="@TOOL_VERSION@.1"> 2 <tool id="seqtk_fqchk" name="seqtk_fqchk" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>fastq QC (base/quality summary)</description> 3 <description>fastq QC (base/quality summary)</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"> 8 <expand macro="requirements">
9 <requirement type="package" version="@AWK_VERSION@">gawk</requirement> 9 <requirement type="package" version="@AWK_VERSION@">gawk</requirement>
10 </expand> 10 </expand>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <command><![CDATA[ 12 <command><![CDATA[
18 <inputs> 18 <inputs>
19 <expand macro="in_fq"/> 19 <expand macro="in_fq"/>
20 <param argument="-q" type="integer" value="20" label="Quality values" help="Use 0 to get the distribution of all quality values"/> 20 <param argument="-q" type="integer" value="20" label="Quality values" help="Use 0 to get the distribution of all quality values"/>
21 </inputs> 21 </inputs>
22 <outputs> 22 <outputs>
23 <data name="default" format="tabular" label="Quality information for $in_file.name"/> 23 <data name="default" format="tabular" label="${tool.name} on ${on_string}: Quality information"/>
24 </outputs> 24 </outputs>
25 <tests> 25 <tests>
26 <test> 26 <test>
27 <param name="in_file" value="seqtk_fqchk.fq" ftype="fastq"/> 27 <param name="in_file" value="seqtk_fqchk.fq" ftype="fastq"/>
28 <output name="default" file="seqtk_fqchk.out" ftype="tabular"/> 28 <output name="default" file="seqtk_fqchk.out" ftype="tabular"/>