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comparison seqtk_sample.xml @ 9:4b494533146a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6
author iuc
date Sat, 09 Dec 2023 11:14:21 +0000
parents 3da72230c066
children
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8:3da72230c066 9:4b494533146a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_sample" name="seqtk_sample" version="@TOOL_VERSION@.2"> 2 <tool id="seqtk_sample" name="seqtk_sample" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>random subsample of fasta or fastq sequences</description> 3 <description>random subsample of fasta or fastq sequences</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <expand macro="stdio"/>
10 <command><![CDATA[ 10 <command><![CDATA[
11 seqtk sample 11 seqtk sample
12 -s $s 12 -s $s
22 <section name="advanced" title="Advanced options" expanded="false"> 22 <section name="advanced" title="Advanced options" expanded="false">
23 <param name="single_pass_mode" type="boolean" truevalue="" falsevalue="-2" checked="false" label="Enable 1-pass mode" help="Use this if the number of reads you want to sample is small enough to fit into memory. If you're not sure, don't use this."/> 23 <param name="single_pass_mode" type="boolean" truevalue="" falsevalue="-2" checked="false" label="Enable 1-pass mode" help="Use this if the number of reads you want to sample is small enough to fit into memory. If you're not sure, don't use this."/>
24 </section> 24 </section>
25 </inputs> 25 </inputs>
26 <outputs> 26 <outputs>
27 <data name="default" format_source="in_file" label="Subsample of reads from $in_file.name"/> 27 <data name="default" format_source="in_file" label="${tool.name} on ${on_string}: Subsample of reads"/>
28 </outputs> 28 </outputs>
29 <tests> 29 <tests>
30 <test> 30 <test>
31 <param name="in_file" value="seqtk_sample.fa"/> 31 <param name="in_file" value="seqtk_sample.fa"/>
32 <param name="subsample_size" value="4"/> 32 <param name="subsample_size" value="4"/>