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comparison seqtk_seq.xml @ 9:4b494533146a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6
author iuc
date Sat, 09 Dec 2023 11:14:21 +0000
parents 3da72230c066
children
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8:3da72230c066 9:4b494533146a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_seq" name="seqtk_seq" version="@TOOL_VERSION@.3"> 2 <tool id="seqtk_seq" name="seqtk_seq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>common transformation of FASTA/Q</description> 3 <description>common transformation of FASTA/Q</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <expand macro="stdio"/>
10 <command><![CDATA[ 10 <command><![CDATA[
11 seqtk seq -q $q 11 seqtk seq -q $q
12 -X $X 12 -X $X
52 <param argument="-N" type="boolean" truevalue="-N" falsevalue="" checked="false" label="Drop sequences containing ambiguous bases" /> 52 <param argument="-N" type="boolean" truevalue="-N" falsevalue="" checked="false" label="Drop sequences containing ambiguous bases" />
53 <param name="x1" argument="-1" type="boolean" truevalue="-1" falsevalue="" checked="false" label="Output the 2n-1 reads only" /> 53 <param name="x1" argument="-1" type="boolean" truevalue="-1" falsevalue="" checked="false" label="Output the 2n-1 reads only" />
54 <param name="x2" argument="-2" type="boolean" truevalue="-2" falsevalue="" checked="false" label="Output the 2n reads only" /> 54 <param name="x2" argument="-2" type="boolean" truevalue="-2" falsevalue="" checked="false" label="Output the 2n reads only" />
55 </inputs> 55 </inputs>
56 <outputs> 56 <outputs>
57 <data name="default" format_source="in_file" /> 57 <data name="default" format_source="in_file" label="${tool.name} on ${on_string}" />
58 </outputs> 58 </outputs>
59 <tests> 59 <tests>
60 <!-- This is a sorry excuse for a test for a tool which does way more 60 <!-- This is a sorry excuse for a test for a tool which does way more
61 than it should, but upstream decided to put a TON of functionality 61 than it should, but upstream decided to put a TON of functionality
62 into a single tool rather than using the single responsibility 62 into a single tool rather than using the single responsibility