Mercurial > repos > iuc > seqtk

comparison seqtk_mergepe.xml @ 7:58c8ece95b53 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 35c8480f525d211d5e9996086c60b2c6d4f89146"
author iuc
date Tue, 10 Sep 2019 13:58:48 -0400
parents a09586d5149a
children 3da72230c066
comparison
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6:288f7f69fe25 7:58c8ece95b53
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[ 9 <command><![CDATA[
10 seqtk mergepe 10 seqtk mergepe
11 '$in_fq1' 11 '$in_fq1'
12 '$in_fq2' 12 '$in_fq2'
13 #echo "| pigz --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' 13 #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> 16 <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/>
17 <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> 17 <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/>
18 </inputs> 18 </inputs>