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comparison macros.xml @ 5:a09586d5149a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
author iuc
date Fri, 11 Jan 2019 05:15:20 -0500
parents ecf1c30da3a2
children 58c8ece95b53
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4:ecf1c30da3a2 5:a09586d5149a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.3">seqtk</requirement> 5 <requirement type="package" version="@TOOL_VERSION@">seqtk</requirement>
6 <requirement type="package" version="2.3.4">pigz</requirement>
6 <yield/> 7 <yield/>
7 </requirements> 8 </requirements>
8 </xml> 9 </xml>
9 <token name="@WRAPPER_VERSION@">1.3</token> 10 <token name="@TOOL_VERSION@">1.3</token>
11 <token name="@AWK_VERSION@">4.2.1</token>
10 <xml name="stdio"> 12 <xml name="stdio">
11 <stdio> 13 <stdio>
12 <!-- Anything other than zero is an error --> 14 <!-- Anything other than zero is an error -->
13 <exit_code range="1:"/> 15 <exit_code range="1:"/>
14 <exit_code range=":-1"/> 16 <exit_code range=":-1"/>
22 </xml> 24 </xml>
23 <xml name="in_faq"> 25 <xml name="in_faq">
24 <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/> 26 <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/>
25 </xml> 27 </xml>
26 <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[ 28 <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[
27 #echo "| gzip --no-name" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' 29 #echo "| pigz --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
28 ]]></token> 30 ]]></token>
29 <token name="@ATTRIBUTION@"><![CDATA[ 31 <token name="@ATTRIBUTION@"><![CDATA[
30 **Attribution** 32 **Attribution**
31 33
32 This Galaxy tool relies on the seqtk toolkit from `lh3/seqtk 34 This Galaxy tool relies on the seqtk toolkit from `lh3/seqtk