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comparison seqtk_fqchk.xml @ 5:a09586d5149a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
author iuc
date Fri, 11 Jan 2019 05:15:20 -0500
parents ecf1c30da3a2
children 3da72230c066
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4:ecf1c30da3a2 5:a09586d5149a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_fqchk" name="seqtk_fqchk" version="@WRAPPER_VERSION@.0"> 2 <tool id="seqtk_fqchk" name="seqtk_fqchk" version="@TOOL_VERSION@.1">
3 <description>fastq QC (base/quality summary)</description> 3 <description>fastq QC (base/quality summary)</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements">
8 <requirement type="package" version="@AWK_VERSION@">gawk</requirement>
9 </expand>
8 <expand macro="stdio"/> 10 <expand macro="stdio"/>
9 <command><![CDATA[ 11 <command><![CDATA[
10 seqtk fqchk 12 seqtk fqchk
11 -q $q 13 -q $q
12 '$in_file' | awk '{if(NR<4){print "#"$0}else{print $0}}' 14 '$in_file' | awk '{if(NR<4){print "#"$0}else{print $0}}'