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comparison seqtk_mergefa.xml @ 5:a09586d5149a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
author iuc
date Fri, 11 Jan 2019 05:15:20 -0500
parents ecf1c30da3a2
children 58c8ece95b53
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4:ecf1c30da3a2 5:a09586d5149a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_mergefa" name="seqtk_mergefa" version="@WRAPPER_VERSION@.0"> 2 <tool id="seqtk_mergefa" name="seqtk_mergefa" version="@TOOL_VERSION@.1">
3 <description>merge two FASTA/Q files</description> 3 <description>merge two FASTA/Q files</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
13 $m 13 $m
14 $r 14 $r
15 $h 15 $h
16 '$in_fa1' 16 '$in_fa1'
17 '$in_fa2' 17 '$in_fa2'
18 #echo "| gzip --no-name" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' 18 #echo "| pigz --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
19 ]]></command> 19 ]]></command>
20 <inputs> 20 <inputs>
21 <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> 21 <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/>
22 <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> 22 <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/>
23 <param argument="-q" type="integer" value="0" label="Quality threshold"/> 23 <param argument="-q" type="integer" value="0" label="Quality threshold"/>