Mercurial > repos > iuc > seqtk
comparison seqtk_randbase.xml @ 3:bc7d99f46a5d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
author | iuc |
---|---|
date | Mon, 05 Jun 2017 13:27:11 -0400 |
parents | f73729b62b51 |
children | ecf1c30da3a2 |
comparison
equal
deleted
inserted
replaced
2:f73729b62b51 | 3:bc7d99f46a5d |
---|---|
1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> | 2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> |
3 <description>choose a random base from hets</description> | 3 <description>choose a random base from hets</description> |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
9 <command><![CDATA[seqtk randbase | 9 <command><![CDATA[ |
10 $in_file | 10 seqtk randbase |
11 > $default]]></command> | 11 '$in_file' |
12 <inputs> | 12 > '$default' |
13 <expand macro="in_faq"/> | 13 ]]></command> |
14 </inputs> | 14 <inputs> |
15 <outputs> | 15 <expand macro="in_faq"/> |
16 <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/> | 16 </inputs> |
17 </outputs> | 17 <outputs> |
18 <tests> | 18 <data name="default" format_source="in_file" label="Unambiguous $in_file.name"/> |
19 <test> | 19 </outputs> |
20 <param name="in_file" value="seqtk_randbase.fa"/> | 20 <tests> |
21 <output name="default" file="seqtk_randbase.out" ftype="fasta"/> | 21 <test> |
22 </test> | 22 <param name="in_file" value="seqtk_randbase.fa"/> |
23 </tests> | 23 <output name="default" file="seqtk_randbase.out" ftype="fasta"/> |
24 <help><![CDATA[ | 24 </test> |
25 </tests> | |
26 <help><![CDATA[ | |
25 **What it does** | 27 **What it does** |
26 | 28 |
27 Randomly resolves ambiguous bases | 29 Randomly resolves ambiguous bases |
28 | 30 |
29 :: | 31 :: |
39 # Output result | 41 # Output result |
40 >ambig | 42 >ambig |
41 ACGTCGTGTT | 43 ACGTCGTGTT |
42 | 44 |
43 @ATTRIBUTION@ | 45 @ATTRIBUTION@ |
44 ]]></help> | 46 ]]></help> |
45 <expand macro="citation" /> | 47 <expand macro="citation" /> |
46 </tool> | 48 </tool> |