comparison seqtk_mergepe.xml @ 9:4b494533146a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6
author iuc
date Sat, 09 Dec 2023 11:14:21 +0000
parents 3da72230c066
children
comparison
equal deleted inserted replaced
8:3da72230c066 9:4b494533146a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_mergepe" name="seqtk_mergepe" version="@TOOL_VERSION@.1"> 2 <tool id="seqtk_mergepe" name="seqtk_mergepe" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>interleave two unpaired FASTA/Q files for a paired-end file</description> 3 <description>interleave two unpaired FASTA/Q files for a paired-end file</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <expand macro="stdio"/>
10 <command><![CDATA[ 10 <command><![CDATA[
11 seqtk mergepe 11 seqtk mergepe
12 '$in_fq1' 12 '$in_fq1'
16 <inputs> 16 <inputs>
17 <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> 17 <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/>
18 <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> 18 <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/>
19 </inputs> 19 </inputs>
20 <outputs> 20 <outputs>
21 <data name="default" format_source="in_fq1" label="$in_fq1.name and $in_fq2.name as interleaved paired-end"/> 21 <data name="default" format_source="in_fq1" label="${tool.name} on ${on_string}: interleaved paired-end"/>
22 </outputs> 22 </outputs>
23 <tests> 23 <tests>
24 <test> 24 <test>
25 <param name="in_fq1" value="paired_dat1.fq" ftype="fastqsanger"/> 25 <param name="in_fq1" value="paired_dat1.fq" ftype="fastqsanger"/>
26 <param name="in_fq2" value="paired_dat2.fq" ftype="fastqsanger"/> 26 <param name="in_fq2" value="paired_dat2.fq" ftype="fastqsanger"/>