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comparison seqtk_cutN.xml @ 4:ecf1c30da3a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
author iuc
date Wed, 17 Oct 2018 05:59:21 -0400
parents bc7d99f46a5d
children a09586d5149a
comparison
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3:bc7d99f46a5d 4:ecf1c30da3a2
10 seqtk cutN 10 seqtk cutN
11 -n $n 11 -n $n
12 -p $p 12 -p $p
13 $g 13 $g
14 '$in_file' 14 '$in_file'
15 > '$default' 15 @CONDITIONAL_GZIP_OUT@
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <expand macro="in_faq"/> 18 <expand macro="in_faq"/>
19 <param argument="-n" type="integer" value="1000" label="Minimum size of N tract" /> 19 <param argument="-n" type="integer" value="1000" label="Minimum size of N tract" />
20 <param argument="-p" type="integer" value="10" label="Penalty for a non-N" /> 20 <param argument="-p" type="integer" value="10" label="Penalty for a non-N" />
26 <tests> 26 <tests>
27 <test> 27 <test>
28 <param name="in_file" value="seqtk_cutn.fa"/> 28 <param name="in_file" value="seqtk_cutn.fa"/>
29 <param name="n" value="1"/> 29 <param name="n" value="1"/>
30 <output name="default" file="seqtk_cutn.out" ftype="fasta"/> 30 <output name="default" file="seqtk_cutn.out" ftype="fasta"/>
31 </test>
32 <test>
33 <param name="in_file" value="seqtk_cutn.fa.gz" ftype="fasta.gz"/>
34 <param name="n" value="1"/>
35 <output name="default" file="seqtk_cutn.out.gz" ftype="fasta.gz"/>
31 </test> 36 </test>
32 </tests> 37 </tests>
33 <help><![CDATA[ 38 <help><![CDATA[
34 **What it does** 39 **What it does**
35 40