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comparison seqtk_mergefa.xml @ 9:4b494533146a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2f75805e2e6cfa2af15076e6f4929b87631360a6
author iuc
date Sat, 09 Dec 2023 11:14:21 +0000
parents 3da72230c066
children
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8:3da72230c066 9:4b494533146a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_mergefa" name="seqtk_mergefa" version="@TOOL_VERSION@.1"> 2 <tool id="seqtk_mergefa" name="seqtk_mergefa" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>merge two FASTA/Q files</description> 3 <description>merge two FASTA/Q files</description>
4 <expand macro="bio_tools"/>
5 <macros> 4 <macros>
6 <import>macros.xml</import> 5 <import>macros.xml</import>
7 </macros> 6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <expand macro="stdio"/> 9 <expand macro="stdio"/>
10 <command><![CDATA[ 10 <command><![CDATA[
11 seqtk mergefa 11 seqtk mergefa
12 -q $q 12 -q $q
26 <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Convert to lowercase when one of the input base is N" /> 26 <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Convert to lowercase when one of the input base is N" />
27 <param argument="-r" type="boolean" truevalue="-r" falsevalue="" checked="false" label="Pick a random allele from het" /> 27 <param argument="-r" type="boolean" truevalue="-r" falsevalue="" checked="false" label="Pick a random allele from het" />
28 <param argument="-h" type="boolean" truevalue="-h" falsevalue="" checked="false" label="Suppress hets in the input" /> 28 <param argument="-h" type="boolean" truevalue="-h" falsevalue="" checked="false" label="Suppress hets in the input" />
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name="default" format_source="in_fa1" label="Merger of $in_fa1.name and $in_fa2.name"/> 31 <data name="default" format_source="in_fa1" label="${tool.name} on ${on_string}"/>
32 </outputs> 32 </outputs>
33 <tests> 33 <tests>
34 <test> 34 <test>
35 <param name="in_fa1" value="seqtk_mergefa1.fa"/> 35 <param name="in_fa1" value="seqtk_mergefa1.fa"/>
36 <param name="in_fa2" value="seqtk_mergefa2.fa"/> 36 <param name="in_fa2" value="seqtk_mergefa2.fa"/>