Mercurial > repos > iuc > seqtk
diff seqtk_mergefa.xml @ 4:ecf1c30da3a2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
| author | iuc |
|---|---|
| date | Wed, 17 Oct 2018 05:59:21 -0400 |
| parents | bc7d99f46a5d |
| children | a09586d5149a |
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--- a/seqtk_mergefa.xml Mon Jun 05 13:27:11 2017 -0400 +++ b/seqtk_mergefa.xml Wed Oct 17 05:59:21 2018 -0400 @@ -15,11 +15,11 @@ $h '$in_fa1' '$in_fa2' -> '$default' +#echo "| gzip --no-name" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></command> <inputs> - <param name="in_fa1" type="data" format="fasta,fastq" label="Input FASTA/Q file #1"/> - <param name="in_fa2" type="data" format="fasta,fastq" label="Input FASTA/Q file #2"/> + <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> + <param name="in_fa2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> <param argument="-q" type="integer" value="0" label="Quality threshold"/> <param argument="-i" type="boolean" truevalue="-i" falsevalue="" checked="false" label="Take intersection" /> <param argument="-m" type="boolean" truevalue="-m" falsevalue="" checked="false" label="Convert to lowercase when one of the input base is N" /> @@ -41,6 +41,12 @@ <param name="m" value="True" /> <output name="default" file="seqtk_mergefa2.out" ftype="fasta"/> </test> + <test> + <param name="in_fa1" value="seqtk_mergefa1.fa.gz" ftype="fasta.gz"/> + <param name="in_fa2" value="seqtk_mergefa2.fa.gz" ftype="fasta.gz"/> + <param name="m" value="True" /> + <output name="default" file="seqtk_mergefa2.out.gz" ftype="fasta.gz"/> + </test> </tests> <help><![CDATA[ **What it does**