Mercurial > repos > iuc > seqtk
diff seqtk_mergepe.xml @ 4:ecf1c30da3a2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
| author | iuc |
|---|---|
| date | Wed, 17 Oct 2018 05:59:21 -0400 |
| parents | bc7d99f46a5d |
| children | a09586d5149a |
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--- a/seqtk_mergepe.xml Mon Jun 05 13:27:11 2017 -0400 +++ b/seqtk_mergepe.xml Wed Oct 17 05:59:21 2018 -0400 @@ -10,20 +10,25 @@ seqtk mergepe '$in_fq1' '$in_fq2' -> '$default' + #echo "| gzip --no-name" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></command> <inputs> - <param name="in_fq1" type="data" format="fasta,fastq" label="Input FASTA/Q file #1"/> - <param name="in_fq2" type="data" format="fasta,fastq" label="Input FASTA/Q file #2"/> + <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> + <param name="in_fq2" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #2"/> </inputs> <outputs> <data name="default" format_source="in_fq1" label="$in_fq1.name and $in_fq2.name as interleaved paired-end"/> </outputs> <tests> <test> - <param name="in_fq1" value="paired_dat1.fq"/> - <param name="in_fq2" value="paired_dat2.fq"/> - <output name="default" file="paired_dat.fq" ftype="fastq"/> + <param name="in_fq1" value="paired_dat1.fq" ftype="fastqsanger"/> + <param name="in_fq2" value="paired_dat2.fq" ftype="fastqsanger"/> + <output name="default" file="paired_dat.fq" ftype="fastqsanger"/> + </test> + <test> + <param name="in_fq1" value="paired_dat1.fq.gz" ftype="fastqsanger.gz"/> + <param name="in_fq2" value="paired_dat2.fq.gz" ftype="fastqsanger.gz"/> + <output name="default" file="paired_dat.fq.gz" ftype="fastqsanger.gz"/> </test> </tests> <help><![CDATA[