Mercurial > repos > iuc > seqtk
view macros.xml @ 8:3da72230c066 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 690c73637e3b8be3a52fe3afc8ba6436c4bab46f"
author | iuc |
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date | Thu, 14 Oct 2021 09:22:39 +0000 |
parents | 58c8ece95b53 |
children | 4b494533146a |
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<?xml version="1.0"?> <macros> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">seqtk</requirement> <requirement type="package" version="2.3.4">pigz</requirement> <yield/> </requirements> </xml> <xml name="bio_tools"> <xrefs> <xref type="bio.tools">seqtk</xref> </xrefs> </xml> <token name="@TOOL_VERSION@">1.3</token> <token name="@AWK_VERSION@">4.2.1</token> <xml name="stdio"> <stdio> <!-- Anything other than zero is an error --> <exit_code range="1:"/> <exit_code range=":-1"/> <!-- In case the return code has not been set propery check stderr too --> <regex match="Error:"/> <regex match="Exception:"/> </stdio> </xml> <xml name="in_fq"> <param name="in_file" type="data" format="fastq,fastq.gz" label="Input FASTQ file"/> </xml> <xml name="in_faq"> <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/> </xml> <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[ #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution** This Galaxy tool relies on the seqtk toolkit from `lh3/seqtk <https://github.com/lh3/seqtk/>`_, developed by Heng Li at the Broad Institute ]]></token> <xml name="citation"> <citations> </citations> </xml> </macros>