Mercurial > repos > iuc > seqtk
view seqtk_dropse.xml @ 1:61718851f199 draft
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author | iuc |
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date | Thu, 05 Feb 2015 12:00:43 -0500 |
parents | e0a0fd938de4 |
children | f73729b62b51 |
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<?xml version="1.0"?> <tool id="seqtk_dropse" name="seqtk_dropse" version="@WRAPPER_VERSION@.0"> <description>drop unpaired from interleaved Paired End FASTA/Q</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <expand macro="stdio"/> <command><![CDATA[seqtk dropse $in_file > $default]]></command> <inputs> <expand macro="in_faq"/> </inputs> <outputs> <data format_source="in_file" hidden="false" name="default" label="Only paired-end reads from $in_file.name"/> </outputs> <tests> <test> <param name="in_file" value="seqtk_dropse.fq"/> <output name="default" file="seqtk_dropse.out" ftype="fastq"/> </test> </tests> <help><![CDATA[ **What it does** Remove unpaired reads in an interleaved paired-end FASTA/Q file. Given a fastq file with unpaired reads: :: @test-6/1 AGCTTGACGC + ?.HCF@C>>F @test-6/2 TGCGAAGACC + >2?A?A@@7? @test-4/1 CTTGACGCTG + I@>3EFCG@C @test-2/1 AGACCAAAAT + ??><6E?IFC @test-2/2 CTGGCGAATT + ?=?*?A?<?@ This tool will remove the offending reads (test-4/1), leaving just the paired data. :: @test-6/1 AGCTTGACGC + ?.HCF@C>>F @test-6/2 TGCGAAGACC + >2?A?A@@7? @test-2/1 AGACCAAAAT + ??><6E?IFC @test-2/2 CTGGCGAATT + ?=?*?A?<?@ @ATTRIBUTION@ ]]></help> </tool>