Mercurial > repos > iuc > seurat
diff Seurat.R @ 9:c4db6ec33fec draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat commit 7681c9101062f58ac4eb296a98b1644d4ed2340a"
author | iuc |
---|---|
date | Thu, 21 Oct 2021 15:57:20 +0000 |
parents | 764f076e9d52 |
children | fab6ff46e019 |
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--- a/Seurat.R Thu Jun 10 17:19:49 2021 +0000 +++ b/Seurat.R Thu Oct 21 15:57:20 2021 +0000 @@ -115,6 +115,6 @@ #+ echo = `showcode`, warning = `warn`, include = `heatmaps` markers <- Seurat::FindAllMarkers(seuset, only.pos = TRUE, min.pct = min_pct, logfc.threshold = logfc_threshold) top10 <- dplyr::group_by(markers, cluster) -top10 <- dplyr::top_n(top10, 10, avg_logFC) +top10 <- dplyr::top_n(top10, 10, avg_log2FC) Seurat::DoHeatmap(seuset, features = top10$gene) # nolint end