Mercurial > repos > iuc > seurat_preprocessing

comparison macros.xml @ 1:6bccf5f85f92 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat_v5 commit 566984b588e88225f0b3f2dae88c6fd084315e7c
author iuc
date Tue, 05 Nov 2024 11:54:52 +0000
parents c3170652bd98
children
comparison
equal deleted inserted replaced
0:c3170652bd98 1:6bccf5f85f92
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">5.0</token> 2 <token name="@TOOL_VERSION@">5.0</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">23.0</token> 4 <token name="@PROFILE@">23.0</token>
5 <xml name="bio_tools">
6 <xrefs>
7 <xref type="bio.tools">seurat</xref>
8 </xrefs>
9 </xml>
5 <xml name="requirements"> 10 <xml name="requirements">
6 <requirements> 11 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement> 12 <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement>
8 <requirement type="package" version="1.2.1">fit-sne</requirement> 13 <requirement type="package" version="1.2.1">fit-sne</requirement>
9 <requirement type="package" version="3.58.1">bioconductor-limma</requirement> 14 <requirement type="package" version="3.58.1">bioconductor-limma</requirement>
139 <data name="inspect_general" format="txt" from_work_dir="inspect.txt" label="${tool.name} Inspect General on ${on_string}"> 144 <data name="inspect_general" format="txt" from_work_dir="inspect.txt" label="${tool.name} Inspect General on ${on_string}">
140 <filter>method['method'] == 'Inspect' and method['inspect']['inspect'] == 'General'</filter> 145 <filter>method['method'] == 'Inspect' and method['inspect']['inspect'] == 'General'</filter>
141 </data> 146 </data>
142 </xml> 147 </xml>
143 <token name="@CMD_inspect_rds_outputs@"><![CDATA[ 148 <token name="@CMD_inspect_rds_outputs@"><![CDATA[
144 write.table(inspect, 'inspect_out.tab', sep="\t", col.names = col.names, row.names = row.names, quote = FALSE) 149 write.table(inspect, 'inspect_out.tab', sep="\t", col.names = col.names, row.names = row.names, quote = FALSE)
145 ]]> 150 ]]>
146 </token> 151 </token>
147 <xml name="plot_out"> 152 <xml name="plot_out">
148 <data name="plot_out_png" format="png" from_work_dir="plot.png" label="${tool.name} (${method.method}) on ${on_string}: png plot"> 153 <data name="plot_out_png" format="png" from_work_dir="plot.png" label="${tool.name} (${method.method}) on ${on_string}: png plot">
149 <filter>plot_format == 'png'</filter> 154 <filter>plot_format == 'png'</filter>