Mercurial > repos > iuc > shovill
diff shovill.xml @ 6:83ead2be47b2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/shovill commit f667915d861dbf0a25cc8fd132cc956d82e73ee9"
| author | iuc |
|---|---|
| date | Thu, 02 Jul 2020 08:58:03 -0400 |
| parents | 8d1af5db538d |
| children | 2a9baa0c4316 |
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--- a/shovill.xml Sun Jun 28 04:16:16 2020 -0400 +++ b/shovill.xml Thu Jul 02 08:58:03 2020 -0400 @@ -1,7 +1,7 @@ -<tool id="shovill" name="Shovill" version="@TOOL_VERSION@+galaxy1"> +<tool id="shovill" name="Shovill" version="@TOOL_VERSION@+galaxy0"> <description>Faster SPAdes assembly of Illumina reads</description> <macros> - <token name="@TOOL_VERSION@">1.0.4</token> + <token name="@TOOL_VERSION@">1.1.0</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">shovill</requirement> @@ -114,8 +114,8 @@ </output> <output name="shovill_std_log" ftype="txt" > <assert_contents> - <has_text text="[mash]"/> - <has_text text="[lighter] Processed 1714 reads"/> + <has_text text="Read stats: total_bp = 300000"/> + <has_text text="[lighter] Processed 820 reads"/> <has_text text="[FLASH] FLASH v1.2.11 complete!"/> <has_text text="[spades] ======= SPAdes pipeline finished."/> </assert_contents> @@ -140,9 +140,8 @@ </output> <output name="shovill_std_log" ftype="txt" > <assert_contents> - <has_text text="[mash] Writing to"/> <has_text text="[trimmomatic] TrimmomaticPE: Completed successfully"/> - <has_text text="[lighter] Processed 2000 reads:"/> + <has_text text="[lighter] Processed"/> <has_text text="[FLASH] FLASH v1.2.11 complete!"/> <has_text text="[spades] ======= SPAdes pipeline finished."/> <has_text text="[bwa+samtools-sort] [samclip] Done."/> @@ -163,10 +162,10 @@ </output> <output name="shovill_std_log" ftype="txt" > <assert_contents> - <has_text text="[mash]"/> - <has_text text="[lighter] Processed 1714 reads"/> + <has_text text="[lighter] Processed"/> <has_text text="[FLASH] FLASH v1.2.11 complete!"/> <has_text_matching expression="\[megahit\] .* ALL DONE"/> + <has_text text="[shovill] Done."/> </assert_contents> </output> </test> @@ -182,10 +181,10 @@ </output> <output name="shovill_std_log" ftype="txt" > <assert_contents> - <has_text text="[mash]"/> - <has_text text="[lighter] Processed 1714 reads"/> + <has_text text="[lighter] Processed"/> <has_text text="[FLASH] FLASH v1.2.11 complete!"/> <has_text text="[skesa] DONE"/> + <has_text text="[shovill] Done."/> </assert_contents> </output> </test> @@ -201,10 +200,10 @@ </output> <output name="shovill_std_log" ftype="txt" > <assert_contents> - <has_text text="[mash]"/> - <has_text text="[lighter] Processed 1714 reads"/> + <has_text text="[lighter] Processed"/> <has_text text="[FLASH] FLASH v1.2.11 complete!"/> <has_text text="[velvetg] Final graph has"/> + <has_text text="[shovill] Done."/> </assert_contents> </output> </test> @@ -220,10 +219,10 @@ </output> <output name="shovill_std_log" ftype="txt" > <assert_contents> - <has_text text="[mash]"/> - <has_text text="[lighter] Processed 1714 reads"/> + <has_text text="[lighter] Processed"/> <has_text text="[FLASH] FLASH v1.2.11 complete!"/> <has_text text="[spades] ======= SPAdes pipeline finished."/> + <has_text text="[shovill] Done."/> </assert_contents> </output> </test>