# HG changeset patch
# User iuc
# Date 1593332176 14400
# Node ID 8d1af5db538dbc901af3da0b26fe9b84e2932df7
# Parent  d9f6a00b6db7e978506d8d2e64cd22d672d614c1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/shovill commit da99aa8018e36c84fc4cbd7c73923fc710b3b31a"

diff -r d9f6a00b6db7 -r 8d1af5db538d shovill.xml
--- a/shovill.xml	Sun Aug 25 05:14:31 2019 -0400
+++ b/shovill.xml	Sun Jun 28 04:16:16 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="shovill" name="Shovill" version="@TOOL_VERSION@+galaxy0">
+<tool id="shovill" name="Shovill" version="@TOOL_VERSION@+galaxy1">
     <description>Faster SPAdes assembly of Illumina reads</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0.4</token>
@@ -19,6 +19,13 @@
             ln -s '$library.input1.forward' fastq_r1.'$r1_ext' &&
             ln -s '$library.input1.reverse' fastq_r2.'$r2_ext' &&
         #end if
+
+	## Sets the memory used by Shovill according to the following conditions
+	## (1) If SHOVILL_RAM is already set, use this value
+	## (2) Otherwise, set based on GALAXY_MEMORY_MB
+	## (3) Or default to 4 GB if GALAXY_MEMORY_MB is unset
+	GALAXY_MEMORY_GB=\$((\${GALAXY_MEMORY_MB:-4096}/1024)) &&
+	SHOVILL_RAM=\${SHOVILL_RAM:-\${GALAXY_MEMORY_GB}} &&
         
         shovill
             --outdir 'out'