Mercurial > repos > iuc > sickle
diff tool_dependencies.xml @ 0:a5f56370e870 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sickle commit 128d3f255f00c47fa2b16d9b7432d48a089660c1
author | iuc |
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date | Thu, 12 Nov 2015 07:05:48 -0500 |
parents | |
children | 89c9361b93da |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Nov 12 07:05:48 2015 -0500 @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="zlib" version="1.2.8"> + <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="sickle" version="1.33"> + <install version="1.0"> + <actions> + <action target_filename="sickle-1.33.tar.gz" type="download_by_url">https://github.com/najoshi/sickle/archive/v1.33.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="zlib" version="1.2.8" /> + </repository> + </action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>sickle</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +Sickle is a windowed adaptive trimming tool for FASTQ files using quality. + </readme> + </package> +</tool_dependency>