diff tool_dependencies.xml @ 6:6756c87dc2d4 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sickle commit 7f0dbcf650d20acd80d7082bdae9759d51a1480c"
author iuc
date Thu, 05 Sep 2019 13:14:23 -0400
parents 3905ccd5c631
children
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--- a/tool_dependencies.xml	Thu Apr 13 16:06:10 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,29 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="zlib" version="1.2.8">
-        <repository changeset_revision="411985b46ae8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="sickle" version="1.33">
-        <install version="1.0">
-            <actions>
-                <action target_filename="sickle-1.33.tar.gz" type="download_by_url">https://github.com/najoshi/sickle/archive/v1.33.tar.gz</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="411985b46ae8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                        <package name="zlib" version="1.2.8" />
-                    </repository>
-                </action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>sickle</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Sickle is a windowed adaptive trimming tool for FASTQ files using quality.
-        </readme>
-    </package>
-</tool_dependency>