Mercurial > repos > iuc > sickle
diff tool_dependencies.xml @ 6:6756c87dc2d4 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sickle commit 7f0dbcf650d20acd80d7082bdae9759d51a1480c"
author | iuc |
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date | Thu, 05 Sep 2019 13:14:23 -0400 |
parents | 3905ccd5c631 |
children |
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--- a/tool_dependencies.xml Thu Apr 13 16:06:10 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,29 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="zlib" version="1.2.8"> - <repository changeset_revision="411985b46ae8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="sickle" version="1.33"> - <install version="1.0"> - <actions> - <action target_filename="sickle-1.33.tar.gz" type="download_by_url">https://github.com/najoshi/sickle/archive/v1.33.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="411985b46ae8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="zlib" version="1.2.8" /> - </repository> - </action> - <action type="shell_command">make</action> - <action type="move_file"> - <source>sickle</source> - <destination>$INSTALL_DIR/bin</destination> - </action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> -Sickle is a windowed adaptive trimming tool for FASTQ files using quality. - </readme> - </package> -</tool_dependency>